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Updated: May 7, 2026

Quantifying the Binding Interactions Between Cu(II) and Peptide Residues in the Presence and Absence of Chromophores
Published on: April 5, 2022
Density functional study of Cu(2+)-phenylalanine complex under micro-solvation environment
Aravindhan Ganesan1, Jens Dreyer, Feng Wang
1eChemistry Laboratory, Faculty of Life and Social Sciences, Swinburne University of Technology, Victoria, Australia.
This study explores phenylalanine-copper (II) ([Phe-Cu](2+)) complexes using atomistic simulations. Findings reveal water molecule interactions and a unique stabilizing motif in hydrated [Phe-Cu](2+) structures.
Area of Science:
- Computational Chemistry
- Biophysical Chemistry
- Materials Science
Background:
- Understanding metal-ligand interactions is crucial in biochemistry and materials science.
- The behavior of amino acid-metal complexes in solution influences biological processes and catalytic activity.
Purpose of the Study:
- To investigate the atomistic structures of phenylalanine-copper (II) ([Phe-Cu](2+)) complexes.
- To explore the micro-solvation processes and structural dynamics of these complexes.
Main Methods:
- Density functional theory (DFT) calculations.
- Structural relaxations and Car-Parrinello Molecular Dynamics (CPMD) simulations.
- B3LYP/6-311++G** model for gas-phase optimization.
Main Results:
- Phenylalanine transitions from neutral to zwitterionic form with increasing hydration (n≥2).
- Copper (II) coordination in [Phe-Cu](2+) complexes does not exceed four, involving water and carboxylate oxygen.
- A stabilizing structural motif, (N)H···O(3)···H2O-Cu(2+), was identified.
Conclusions:
- The study elucidates the structural preferences and solvation behavior of [Phe-Cu](2+) complexes.
- Identified key interactions and coordination numbers provide insights into the stability and dynamics of these systems.
- The findings contribute to understanding metal-amino acid complexation in aqueous environments.
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