Related Experiment Video
Updated: May 7, 2026

Isolation of Translating Ribosomes Containing Peptidyl-tRNAs for Functional and Structural Analyses
Published on: February 25, 2011
Polymyxins and analogues bind to ribosomal RNA and interfere with eukaryotic translation in vitro
Lisa S McCoy1, Kade D Roberts, Roger L Nation
1Department of Chemistry and Biochemistry, University of California, San Diego, 9500 Gilman Drive, La Jolla, CA 92093 (USA) http://torgroup.ucsd.edu/
Abstract:
Looking for targets: while the bactericidal activity of polymyxins is attributed to changes in membrane permeation, we show that these antibiotics can bind prokaryotic and eukaryotic A-sites, domains responsible for translational decoding. Polymyxin B, colistin and analogues also hinder eukaryotic translation in vitro. These new targets and effects might be partially responsible for the plethora of adverse effects by these potent bactericidal agents.
Insights
Polymyxin antibiotics, known for killing bacteria by disrupting membranes, also bind to translation machinery in both prokaryotes and eukaryotes. This interaction may explain some of the severe side effects associated with these drugs.
Area of Science:
- Microbiology
- Molecular Biology
- Pharmacology
Background:
- Polymyxins are critical antibiotics for treating infections caused by Gram-negative bacteria.
- Their primary mechanism of action is understood to involve disruption of bacterial membrane integrity.
- However, the full spectrum of polymyxin interactions and their clinical implications remain incompletely understood.
Purpose of the Study:
- To investigate novel molecular targets of polymyxins beyond membrane disruption.
- To explore the potential impact of polymyxins on host cell translational processes.
- To identify mechanisms contributing to polymyxin-associated toxicity.
Main Methods:
- In vitro binding assays to identify antibiotic targets.
- Analysis of interactions with ribosomal A-sites in prokaryotic and eukaryotic systems.
- In vitro translation assays to assess functional effects on protein synthesis.
Main Results:
- Polymyxins, including Polymyxin B and colistin, were found to bind to the A-site of ribosomes in both prokaryotic and eukaryotic cells.
- These antibiotics inhibited eukaryotic translation in vitro.
- The binding to translational machinery represents a newly identified molecular interaction for polymyxins.
Conclusions:
- Polymyxin antibiotics interact with the A-site of ribosomes, a key component of translational decoding.
- This interaction with eukaryotic translation machinery may contribute to the adverse effects observed clinically.
- These findings suggest new avenues for understanding polymyxin pharmacology and toxicity.
Related Concept Videos
Inhibitors of Bacterial Protein Synthesis
Types of RNA
Three main types of RNA are involved in protein synthesis: messenger RNA (mRNA), transfer RNA (tRNA), and ribosomal RNA (rRNA). These RNAs perform diverse functions and can be broadly classified as protein-coding or non-coding RNA. Non-coding RNAs play important roles in the regulation of gene expression in response to developmental and environmental changes. Non-coding RNAs in prokaryotes can be manipulated to develop more effective antibacterial drugs for human or animal use.
RNA...
Types of RNA
RNA Performs Diverse...
Inhibitors of Gram-positive Cell Wall Synthesis
Inhibitors of Viral Protein Synthesis
Eukaryotic Transcription Inhibitors
Eukaryotic transcription inhibitors usually contain two distinct domains, a...

