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Updated: May 6, 2026

11:01
RNA-Associated Chromatin DNA-DNA Interaction Method
Published on: April 30, 2026
77
Deep sequencing of small chromatin-associated RNA: bioinformatic analysis
Sarah Daniela Diermeier1, Gernot Längst
1Biochemistry Centre, Universität Regensburg, Regensburg, Germany.
Methods in Molecular Biology (Clifton, N.J.)
|October 29, 2013
Abstract:
Chromatin-associated RNA (caRNA) is a newly identified class of RNA stably linked to chromatin and responsible for maintaining the higher order structure of euchromatic regions in an accessible form (Schubert et al., Mol Cell 48, 434 - 444, 2012). This section provides a pipeline of bioinformatic analysis for this specific type of RNA-Seq. It can be run locally by combining several scripts or be carried out on the Galaxy platform (Giardine et al., Genome Res 15:1451-1455, 2005).

