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Updated: May 6, 2026

Author Spotlight: Quantitative Detection of DNA Protein Crosslinks and Their Post-Translational Modifications
Published on: April 21, 2023
DDB2 association with PCNA is required for its degradation after UV-induced DNA damage
Ornella Cazzalini1, Paola Perucca1, Roberto Mocchi1
1Dipartimento di Medicina Molecolare; Unità di Immunologia e Patologia Generale; Università di Pavia; Pavia, Italy.
Abstract:
DDB2 is a protein playing an essential role in the lesion recognition step of the global genome sub-pathway of nucleotide excision repair (GG-NER) process. Among the proteins involved in the DNA damage response, p21(CDKN1A) (p21) has been reported to participate in NER, but also to be removed by proteolytic degradation, thanks to its association with PCNA. DDB2 is involved in the CUL4-DDB1 complex mediating p21 degradation; however, the direct interaction between DDB2, p21 and PCNA has been never investigated. Here, we show that DDB2 co-localizes with PCNA and p21 at local UV-induced DNA-damage sites, and these proteins co-immunoprecipitate in the same complex. In addition, we provide evidence that p21 is not able to bind directly DDB2, but, to this end, the presence of PCNA is required. Direct physical association of recombinant DDB2 protein with PCNA is mediated by a conserved PIP-box present in the N-terminal region of DDB2. Mutation of the PIP-box resulted in the loss of protein interaction. Interestingly, the same mutation, or depletion of PCNA by RNA interference, greatly impaired DDB2 degradation induced by UV irradiation. These results indicate that DDB2 is a PCNA-binding protein, and that this association is required for DDB2 proteolytic degradation.
Insights
DNA damage repair protein DDB2 binds to PCNA, a protein crucial for DNA repair. This interaction is essential for DDB2
Area of Science:
- Molecular Biology
- DNA Repair Mechanisms
- Protein Interactions
Background:
- DDB2 is vital for recognizing DNA lesions in global genome nucleotide excision repair (GG-NER).
- p21(CDKN1A) (p21) participates in DNA repair and is degraded via PCNA association.
- DDB2 mediates p21 degradation through the CUL4-DDB1 complex, but its direct interaction with p21 and PCNA remains unclear.
Purpose of the Study:
- To investigate the direct interaction between DDB2, p21, and PCNA.
- To elucidate the role of PCNA in the DDB2-p21 interaction and DDB2 degradation.
Main Methods:
- Co-localization studies at UV-induced DNA damage sites.
- Co-immunoprecipitation assays to confirm protein complex formation.
- Analysis of DDB2-PCNA interaction using recombinant proteins and PIP-box mutants.
- RNA interference to deplete PCNA levels.
Main Results:
- DDB2, PCNA, and p21 co-localize and co-immunoprecipitate at DNA damage sites.
- PCNA is required for p21 to bind DDB2.
- DDB2 directly binds PCNA via a conserved N-terminal PIP-box.
- Mutation of the PIP-box or PCNA depletion impairs UV-induced DDB2 degradation.
Conclusions:
- DDB2 is a PCNA-binding protein.
- The DDB2-PCNA association is critical for DDB2's own proteolytic degradation following UV irradiation.
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