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In Vitro Ubiquitination and Deubiquitination Assays of Nucleosomal Histones
Published on: July 25, 2019
The Role of Ubiquitination in TWEAK-Stimulated Signaling
1Department of Early Discovery Biochemistry, Genentech, Inc. , South San Francisco, CA , USA.
Abstract:
Tumor necrosis factor superfamily ligands and receptors are responsible for development, immunity, and homeostasis of metazoan organisms. Thus, it is not surprising that signals emanating from these receptors are tightly regulated. Binding of TNF-related weak inducer of apoptosis (TWEAK) to its cognate receptor, FN14, triggers the assembly of receptor-associated signaling complex, which allows the activation of canonical and non-canonical nuclear factor kappa B (NF-κB) as well as mitogen-activated protein kinase signaling pathways. Ubiquitin ligases cellular inhibitor of apoptosis 1 and 2 (c-IAP1 and 2) and adaptor proteins TNFR-associated factors 2 and 3 (TRAF2 and TRAF3) are crucial for the regulation of TWEAK signaling as they facilitate the recruitment of distal signaling components including IKK and linear ubiquitin chain assembly complex complexes. At the same time c-IAP1/2, together with TRAF2 and TRAF3, promote constitutive ubiquitination and proteasomal degradation of NF-κB inducing kinase (NIK) - a kinase with critical role in the activation of non-canonical NF-κB signaling. While c-IAP1/2 mediated ubiquitination allows the activation of TWEAK-stimulated canonical NF-κB signaling, these E3 ligases are negative regulators of non-canonical signaling. TWEAK stimulation prompts the recruitment of c-IAP1/2 as well as TRAF2 and TRAF3 to the FN14 signaling complex leading to c-IAP1/2 autoubiquitination and degradation, which stabilizes NIK and allows subsequent phosphorylation of IKKα and partial proteasomal processing of p100 to activate gene expression. Recent studies have revealed that the spatio-temporal pattern of TWEAK-stimulated ubiquitination is a carefully orchestrated process involving several substrates that are modified by different ubiquitin linkages. Understanding the significance of ubiquitination for TWEAK signaling is important for the overall understanding of TWEAK biology and for the design of therapeutics that can be used in the treatment of human pathologies that are driven by TWEAK/FN14 expression and activity.
Insights
Ubiquitin ligases and adaptor proteins regulate TWEAK/FN14 signaling by controlling NF-κB pathways. This regulation is crucial for understanding TWEAK biology and developing therapeutics for related diseases.
Area of Science:
- Cellular signaling and molecular biology
- Immunology and inflammation research
- Cancer biology and therapeutics
Background:
- Tumor necrosis factor superfamily (TNFSF) ligands and receptors are vital for metazoan development, immunity, and homeostasis.
- TWEAK (TNF-related weak inducer of apoptosis) signaling via its receptor FN14 activates key pathways, including NF-κB and MAPKs.
- Dysregulation of TWEAK/FN14 signaling is implicated in various human pathologies.
Purpose of the Study:
- To elucidate the regulatory mechanisms of TWEAK/FN14 signaling, focusing on the role of ubiquitination.
- To investigate how ubiquitin ligases (c-IAP1/2) and adaptor proteins (TRAFs) control canonical and non-canonical NF-κB activation.
- To understand the spatio-temporal dynamics of ubiquitination in TWEAK-mediated signaling.
Main Methods:
- Analysis of TWEAK/FN14 signaling complex assembly and downstream pathway activation.
- Investigation of the roles of cellular inhibitor of apoptosis 1 and 2 (c-IAP1/2) and TNFR-associated factors 2 and 3 (TRAF2/3).
- Examination of NF-κB inducing kinase (NIK) stability and degradation.
- Study of ubiquitination patterns and their impact on signaling.
Main Results:
- c-IAP1/2 and TRAF2/3 are essential for TWEAK-induced canonical NF-κB activation.
- These proteins also regulate non-canonical NF-κB signaling by controlling NIK stability.
- TWEAK stimulation leads to c-IAP1/2 degradation, stabilizing NIK and activating non-canonical pathways.
- Specific ubiquitin linkages play a critical role in orchestrating TWEAK signaling.
Conclusions:
- Ubiquitination is a key regulatory mechanism in TWEAK/FN14 signaling, influencing both canonical and non-canonical NF-κB pathways.
- Understanding these ubiquitination events provides insights into TWEAK biology.
- Targeting TWEAK/FN14 signaling through modulation of ubiquitination may offer therapeutic strategies for diseases driven by this pathway.
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