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Collection and Extraction of Occupational Air Samples for Analysis of Fungal DNA
Published on: May 2, 2018
Identifications of household's spores using mid infrared spectroscopy
Vivechana Dixit1, Byoung Kwan Cho2, Kay Obendorf1
1Fiber Science, Cornell University, Ithaca, NY 14251, USA.
Abstract:
Exposure to household fungi is very common both inside and outside the house and can cause health issues. The application of fourier transforms mid infrared spectroscopy (FTIR) as a screening technique for the detection and identification of household fungi was investigated. Early detection and identification of these household pathogens is very important and critical for their control. The current available methods for identification of fungi are time consuming, expensive and not very specific. Mid IR spectroscopy is a reliable and sensitive technique for the detection of spores. FTIR Spectra of four household fungi such as Aspergillus Ochraceus, Aspergillus Niger, Candida Glabrata and Penicillium Roguefortii were recorded in the mid infrared range from 600 to 4000cm(-1) using attenuated total reflectance (ATR) sampling accessory. Chemometrics analysis using principal component analysis (PCA), canonical variate analysis (CVA) and linear discriminant analysis (LDA) were performed to discriminate the fungi samples. Correspondence analysis (CA) was performed in order to visualize the relationship between different spores. An optimum classification of 100% was achieved for four different fungi. Results demonstrated that discriminant analysis of the FTIR spectra of fungi could be used for rapid detection of household fungi.
Insights
Fourier Transform Infrared (FTIR) spectroscopy offers a rapid and accurate method for identifying common household fungi. This technique provides a sensitive alternative to traditional methods for detecting fungal pathogens.
Area of Science:
- Analytical Chemistry
- Microbiology
- Spectroscopy
Background:
- Household fungi exposure is prevalent and can lead to health problems.
- Current fungal identification methods are slow, costly, and lack specificity.
- Early detection of fungal pathogens is crucial for effective control strategies.
Purpose of the Study:
- To investigate Fourier Transform Infrared (FTIR) spectroscopy for detecting and identifying household fungi.
- To evaluate FTIR as a rapid screening technique for fungal pathogens.
- To compare FTIR-based detection with existing time-consuming methods.
Main Methods:
- FTIR spectra of four common household fungi (Aspergillus Ochraceus, Aspergillus Niger, Candida Glabrata, Penicillium Roguefortii) were recorded.
- Attenuated Total Reflectance (ATR) sampling was used in the mid-infrared range (600-4000 cm⁻¹).
- Chemometric analyses including Principal Component Analysis (PCA), Canonical Variate Analysis (CVA), and Linear Discriminant Analysis (LDA) were applied for discrimination.
Main Results:
- FTIR spectroscopy demonstrated high sensitivity and reliability in detecting fungal spores.
- Chemometric analysis enabled effective discrimination between the four tested fungal species.
- An optimal classification rate of 100% was achieved for differentiating the fungi samples.
Conclusions:
- FTIR spectroscopy, combined with discriminant analysis, offers a rapid and accurate method for household fungi detection.
- This spectroscopic approach provides a significant advancement over traditional, slower identification techniques.
- The findings support the use of FTIR as a valuable tool for screening and identifying common fungal contaminants.
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