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Updated: May 3, 2026

In Situ SIMS and IR Spectroscopy of Well-defined Surfaces Prepared by Soft Landing of Mass-selected Ions
Published on: June 16, 2014
Competing thermodynamic and dynamic factors select molecular assemblies on a gold surface
Thomas K Haxton1, Hui Zhou2, Isaac Tamblyn3
1Molecular Foundry, Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA.
Controlling molecular self-assembly requires understanding multi-scale physics. This study reveals that thermodynamics and dynamics interplay to select specific nanostructures, favoring linear chains over branched ones at low temperatures.
Area of Science:
- Surface science
- Nanotechnology
- Computational chemistry
Background:
- Controlling molecular self-assembly into nanostructures is crucial for nanotechnology.
- Understanding multi-scale physical mechanisms governing assembly is essential.
Purpose of the Study:
- To investigate the self-assembly of 1,4-substituted benzenediamine (BDA) molecules on a gold (111) surface.
- To elucidate the interplay of thermodynamics and dynamics in nanostructure selection.
Main Methods:
- Combining scanning tunneling microscopy (STM) with hierarchical ab initio and statistical mechanical modeling.
- Analyzing intermolecular forces, surface modulation, and assembly dynamics.
Main Results:
- Identified mechanically stabilized nanostructures by hydrogen bonding.
- Demonstrated that thermodynamics and dynamics competition selects specific BDA nanostructures.
- Observed selection of low free energy oriented linear chains and high free energy branched chains at low temperatures.
Conclusions:
- Nanostructure selection is governed by a complex interplay of forces and kinetics.
- Thermodynamic and dynamic factors dictate the final arrangement of adsorbed molecules.
- Specific nanostructures, like linear chains, are favored under certain conditions.
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