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Measuring Interactions of Globular and Filamentous Proteins by Nuclear Magnetic Resonance Spectroscopy NMR and Microscale Thermophoresis MST
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NMR method for simultaneous host-guest binding constant measurement.

Sandip A Kadam1, Kristjan Haav, Lauri Toom

  • 1Institute of Chemistry, University of Tartu , Ravila 14a, 50411 Tartu, Estonia.

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|February 19, 2014
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Summary
This summary is machine-generated.

A new Nuclear Magnetic Resonance (NMR) method accurately measures relative binding affinities of synthetic receptors for guests. This technique allows simultaneous determination of multiple binding affinity differences in a single experiment.

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Area of Science:

  • Supramolecular Chemistry
  • Analytical Chemistry
  • Chemical Sensing

Background:

  • Determining relative binding affinities is crucial for designing selective host-guest systems.
  • Existing methods can be time-consuming or require high concentrations.
  • Nuclear Magnetic Resonance (NMR) spectroscopy offers a sensitive tool for molecular recognition studies.

Purpose of the Study:

  • To develop a novel NMR-based method for measuring relative binding affinities (ΔlogK(ass)) of synthetic receptors.
  • To enable simultaneous determination of multiple ΔlogK(ass) values in a single experimental run.
  • To validate the method's accuracy and compare it with existing techniques.

Main Methods:

  • Utilized NMR spectroscopy in DMSO-d6/H2O (99.5%:0.5% m/m) to measure binding affinity differences.
  • Applied the method to a series of indolocarbazole- and urea-based synthetic receptors interacting with acetate ions.
  • Simultaneously determined multiple ΔlogK(ass) values in a single NMR acquisition.

Main Results:

  • Successfully created a binding affinity scale for 33 receptors, spanning 2.32 log units.
  • Achieved excellent self-consistency with a standard deviation of 0.01 log units.
  • Demonstrated high accuracy through excellent agreement with UV-Vis spectrophotometry results, indicating interchangeability of techniques.

Conclusions:

  • The developed NMR-based method provides an accurate and efficient way to measure relative binding affinities.
  • The technique allows for high-throughput screening of receptor-guest interactions.
  • A correlation was observed between acetate binding affinity and the (15)N chemical shift for symmetrical receptors, offering insights into binding mechanisms.