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RNF8-independent Lys63 poly-ubiquitylation prevents genomic instability in response to replication-associated DNA
Chantal H M A Ramaekers1, Twan van den Beucken1, Robert G Bristow2
1Ontario Cancer Institute and Campbell Family Institute for Cancer Research, Princess Margaret Cancer Centre, University Health Network, Toronto, Ontario, Canada ; Maastricht Radiation Oncology (MaastRO) Lab, GROW - School for Oncology and Developmental Biology, Maastricht University, Maastricht, The Netherlands.
Abstract:
The cellular response to DNA double strand breaks (DSBs) involves the ordered assembly of repair proteins at or near sites of damage. This process is mediated through post-translational protein modifications that include both phosphorylation and ubiquitylation. Recent data have demonstrated that recruitment of the repair proteins BRCA1, 53BP1, and RAD18 to ionizing irradiation (IR) induced DSBs is dependent on formation of non-canonical K63-linked polyubiquitin chains by the RNF8 and RNF168 ubiquitin ligases. Here we report a novel role for K63-ubiquitylation in response to replication-associated DSBs that contributes to both cell survival and maintenance of genome stability. Suppression of K63-ubiquitylation markedly increases large-scale mutations and chromosomal aberrations in response to endogenous or exogenous replication-associated DSBs. These effects are associated with an S-phase specific defect in DNA repair as revealed by an increase in residual 53BP1 foci. Use of both knockdown and knockout cell lines indicates that unlike the case for IR-induced DSBs, the requirement for K63-ubiquitylation for the repair of replication associated DSBs was found to be RNF8-independent. Our findings reveal the existence of a novel K63-ubiquitylation dependent repair pathway that contributes to the maintenance of genome integrity in response to replication-associated DSBs.
Insights
A novel DNA repair pathway involving K63-ubiquitylation is crucial for maintaining genome stability during replication stress. This pathway, independent of RNF8, prevents mutations and chromosomal damage from replication-associated DNA double-strand breaks (DSBs).
Area of Science:
- Molecular Biology
- Genetics
- Cellular Biology
Background:
- DNA double-strand breaks (DSBs) trigger cellular repair mechanisms involving protein modifications like ubiquitylation.
- K63-linked polyubiquitin chains, formed by RNF8 and RNF168, are known to mediate the recruitment of repair proteins to ionizing radiation (IR)-induced DSBs.
Purpose of the Study:
- To investigate the role of K63-ubiquitylation in the cellular response to replication-associated DSBs.
- To determine if K63-ubiquitylation contributes to cell survival and genome stability during replication stress.
Main Methods:
- Utilized knockdown and knockout cell lines to suppress K63-ubiquitylation.
- Assessed mutation frequency, chromosomal aberrations, and 53BP1 foci formation in response to replication-associated DSBs.
- Investigated the involvement of RNF8 in this repair pathway.
Main Results:
- Suppression of K63-ubiquitylation significantly increased large-scale mutations and chromosomal aberrations in response to replication-associated DSBs.
- A defect in S-phase DNA repair was observed, indicated by increased residual 53BP1 foci.
- The requirement for K63-ubiquitylation in repairing replication-associated DSBs was found to be RNF8-independent, contrasting with IR-induced DSBs.
Conclusions:
- A novel K63-ubiquitylation-dependent DNA repair pathway exists for replication-associated DSBs.
- This pathway is essential for maintaining genome integrity and cell survival under replication stress.
- The pathway's RNF8-independence highlights distinct mechanisms for different types of DNA damage.
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