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Unbiased Deep Sequencing of RNA Viruses from Clinical Samples
Published on: July 2, 2016
Lassa fever in post-conflict sierra leone.
Jeffrey G Shaffer1, Donald S Grant2, John S Schieffelin3
1Department of Biostatistics and Bioinformatics, Tulane School of Public Health and Tropical Medicine, New Orleans, Louisiana, United States of America.
Lassa fever remains a significant threat in Sierra Leone, with higher mortality rates observed post-conflict. Expanded outreach and improved diagnostics are crucial for managing this widespread viral hemorrhagic fever.
Area of Science:
- Infectious Diseases
- Public Health
- Virology
Background:
- Lassa fever (LF) is a deadly hemorrhagic disease caused by Lassa virus (LASV), posing a major threat in West Africa.
- Following Sierra Leone's civil conflict, the LF program at Kenema Government Hospital (KGH), in a high-incidence area, was restored.
Purpose of the Study:
- To analyze Lassa fever trends and outcomes in the post-conflict era at KGH.
- To assess the impact of the restored LF program on disease management and patient outcomes.
Main Methods:
- Electronic organization of clinical and laboratory records for suspected LF patients.
- Utilized recombinant antigen-based immunoassays to detect LASV antigenemia and antibodies.
- Reviewed patient demographics, case fatality rates (CFRs), and treatment responses.
Main Results:
- KGH now manages over 500 suspected LF cases annually, with higher observed CFRs compared to pre-conflict studies.
- LF incidence peaked during the dry season, extending beyond traditional endemic zones across ten districts.
- LASV antigenemia was associated with higher mortality in patients under 29 and pregnant women; ribavirin showed a lower CFR when administered early.
Conclusions:
- Lassa fever continues to be a critical public health issue in Sierra Leone.
- Increased geographic spread suggests a need for expanded outreach and surveillance.
- Urgent improvements in case finding, diagnosis, and treatment are vital to reduce LF mortality, highlighting the need for novel therapies.
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