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Updated: May 1, 2026

An Optimized Quantitative Pull-Down Analysis of RNA-Binding Proteins Using Short Biotinylated RNA
Published on: February 17, 2023
Physiological networks and disease functions of RNA-binding protein AUF1
Ashleigh E Moore1, Devon M Chenette, Lauren C Larkin
1Alexandria Center for Life Sciences, New York University School of Medicine, New York, NY, USA.
Abstract:
Regulated messenger RNA (mRNA) decay is an essential mechanism that governs proper control of gene expression. In fact, many of the most physiologically potent proteins are encoded by short-lived mRNAs, many of which contain AU-rich elements (AREs) in their 3'-untranslated region (3'-UTR). AREs target mRNAs for post-transcriptional regulation, generally rapid decay, but also stabilization and translation inhibition. AREs control mRNA turnover and translation activities through association with trans-acting RNA-binding proteins that display high affinity for these AU-rich regulatory elements. AU-rich element RNA-binding protein (AUF1), also known as heterogeneous nuclear ribonucleoprotein D (HNRNPD), is an extensively studied AU-rich binding protein (AUBP). AUF1 has been shown to regulate ARE-mRNA turnover, primarily functioning to promote rapid ARE-mRNA degradation. In certain cellular contexts, AUF1 has also been shown to regulate gene expression at the translational and even the transcriptional level. AUF1 comprises a family of four related protein isoforms derived from a common pre-mRNA by differential exon splicing. AUF1 isoforms have been shown to display multiple and distinct functions that include the ability to target ARE-mRNA stability or decay, and transcriptional activation of certain genes that is controlled by their differential subcellular locations, expression levels, and post-translational modifications. AUF1 has been implicated in controlling a variety of physiological functions through its ability to regulate the expression of numerous mRNAs containing 3'-UTR AREs, thereby coordinating functionally related pathways. This review highlights the physiological functions of AUF1-mediated regulation of mRNA and gene expression, and the consequences of deficient AUF1 levels in different physiological settings.
Insights
AU-rich element RNA-binding protein (AUF1) regulates gene expression by controlling messenger RNA (mRNA) decay and translation. This review explores AUF1
Area of Science:
- Molecular Biology
- Gene Expression Regulation
- Post-transcriptional Control
Background:
- Regulated mRNA decay is crucial for controlling gene expression.
- Short-lived mRNAs, often containing AU-rich elements (AREs), encode potent proteins.
- AREs in the 3'-UTR direct mRNA for decay, stabilization, or translation inhibition.
Purpose of the Study:
- To review the physiological functions of AU-rich element RNA-binding protein (AUF1).
- To highlight AUF1's role in mRNA turnover and gene expression.
- To discuss the consequences of AUF1 deficiency in various physiological contexts.
Main Methods:
- Literature review of studies on AUF1 and its interactions with ARE-mRNAs.
- Analysis of AUF1's functions in mRNA decay, translation, and transcription.
- Examination of AUF1 isoform diversity and their distinct roles.
Main Results:
- AUF1 (HNRNPD) is a key RNA-binding protein regulating ARE-mRNA turnover, primarily promoting decay.
- AUF1 isoforms exhibit diverse functions, including mRNA stability control and transcriptional activation.
- AUF1 influences various physiological pathways by regulating ARE-mRNA expression.
Conclusions:
- AUF1 plays a critical role in post-transcriptional gene regulation through ARE-mRNAs.
- Differential expression and localization of AUF1 isoforms contribute to distinct cellular functions.
- Dysregulation of AUF1 impacts physiological processes, underscoring its importance.
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