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Parallelized multi-graphics processing unit framework for high-speed Gabor-domain optical coherence microscopy.

Patrice Tankam1, Anand P Santhanam2, Kye-Sung Lee3

  • 1University of Rochester, The Institute of Optics, 275 Hutchinson Road, Rochester, New York 14627bUniversity of Rochester, Center for Visual Science, 601 Elmwood Avenue, Rochester, New York 14642.

Journal of Biomedical Optics
|April 4, 2014
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Summary
This summary is machine-generated.

This study introduces a multi-graphics processing unit (GPU) framework for fast, real-time processing of 3-D skin images from Gabor-domain optical coherence microscopy (GD-OCM). This enables rapid, high-resolution skin imaging in clinical settings.

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Area of Science:

  • Biomedical Optics
  • Medical Imaging Technology
  • Computational Imaging

Background:

  • Gabor-domain optical coherence microscopy (GD-OCM) offers high-resolution 3-D skin imaging.
  • Clinical applications of GD-OCM are limited by the need for real-time image processing.

Purpose of the Study:

  • To develop and evaluate a parallelized, multi-graphics processing unit (GPU) computing framework for real-time GD-OCM image processing.
  • To achieve computational speeds that exceed GD-OCM acquisition rates for clinical usability.

Main Methods:

  • Implemented a parallelized control mechanism to distribute computation tasks across multiple GPUs.
  • Optimized the number of amplitude-scans (A-scans) processed per GPU to maximize memory usage and core throughput.
  • Investigated five computing architectures for computational speed-up on 1000x1000 A-scan datasets.

Main Results:

  • The multi-GPU framework achieved processing speeds faster than GD-OCM acquisition.
  • Processing a 1x1x0.6 mm³ skin sample took approximately 13 seconds with two GPUs and 6.5 seconds with four GPUs.
  • Demonstrated real-time display of 3-D GD-OCM data is feasible.

Conclusions:

  • The proposed parallelized multi-GPU framework significantly accelerates GD-OCM image processing.
  • This advancement facilitates high-speed, real-time 3-D skin imaging for clinical applications.
  • Enables immediate visualization of histological-resolution skin data for clinicians.