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Updated: May 1, 2026

JUMPn: A Streamlined Application for Protein Co-Expression Clustering and Network Analysis in Proteomics
Published on: October 19, 2021
Mapping the structure and dynamics of genomics-related MeSH terms complex networks
Jesús M Siqueiros-García1, Enrique Hernández-Lemus2, Rodrigo García-Herrera3
1Ethical, Legal and Social Studies Department, National Institute of Genomic Medicine, Mexico City, D.F., Mexico.
The evolution of scientific research, like genomics, can be modeled using complex networks. Analyzing keywords from over 49,000 papers reveals network changes reflecting scientific progress and distinct patterns across disciplines.
Area of Science:
- Bibliometrics and Scientometrics
- Network Science
- Genomics Research
Background:
- Scientific idea evolution may mirror socio-cognitive frameworks.
- Systematic analysis of scientific development can model collective scientific dynamics.
- Models require empirical evidence and formal analysis for rigor.
Purpose of the Study:
- To study the dynamics and structure of genomics research development.
- To analyze over 49,000 genomics papers from PubMed (1987-2011).
- To construct and analyze complex networks of Medical Subject Headings (MeSH) terms.
Main Methods:
- Corpus compilation of genomics articles from PubMed (1987-2011).
- Categorization of articles using Medical Subject Headings (MeSH) descriptors.
- Construction and analysis of complex networks based on MeSH term co-occurrence.
Main Results:
- Genomics research networks exhibit complex structures resembling small-world networks.
- Network evolution shows a phase transition around the Human Genome Project completion.
- Different disciplines (science, humanities, technology) display distinct network evolution patterns and topological changes.
Conclusions:
- Complex network analysis provides insights into the dynamics of scientific fields like genomics.
- The study highlights the impact of major scientific milestones on research structures.
- Disciplinary differences in network dynamics offer a new perspective on the evolution of scientific knowledge.
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