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The biological clock is involved in many aspects of regulating complex physiology in all animals. It was in 1935 when German zoologists, Hans Kalmus and Erwin Bünning, discovered the existence of circadian rhythm in Drosophila melanogaster. However, the internal molecular mechanisms behind the circadian clock remained a mystery until 1984, when Jeffrey C. Hall, Michael Rosbash, and Michael W. Young discovered the expression of the Per gene oscillating over a 24-hour cycle. In subsequent...
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Machine learning helps identify CHRONO as a circadian clock component.

Ron C Anafi1, Yool Lee2, Trey K Sato2

  • 1Division of Sleep Medicine, University of Pennsylvania School of Medicine, Philadelphia, Pennsylvania, United States of America; Center for Sleep and Circadian Neurobiology, University of Pennsylvania School of Medicine, Philadelphia, Pennsylvania, United States of America.

Plos Biology
|April 17, 2014
PubMed
Summary
This summary is machine-generated.

Researchers discovered CHRONO, a new clock gene regulating daily rhythms. This computational and experimental study identifies CHRONO as a key player in circadian molecular dynamics, impacting physiology and behavior.

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Area of Science:

  • Chronobiology
  • Molecular Biology
  • Genetics

Background:

  • Daily rhythms in physiology and behavior are driven by

Purpose of the Study:

  • To accelerate the discovery of novel clock genes
  • To identify and prioritize candidate clock components using a computational approach
  • To experimentally validate the function of candidate genes in circadian regulation

Main Methods:

  • Probabilistic machine learning to integrate genome-scale data
  • Mammalian two-hybrid screens to identify interactions
  • In vitro cellular rhythm modulation assays
  • Bi-molecular fluorescence complementation and co-immunoprecipitation
  • CHRONO knockout mouse model

Main Results:

  • A computational approach identified candidate clock genes
  • Several candidates physically interact with known clock components
  • CHRONO (Gene Model 129) represses the BMAL1/CLOCK transcriptional complex by abrogating BMAL1 binding to CBP
  • CHRONO knockout mice exhibit a prolonged free-running circadian period

Conclusions:

  • CHRONO is a functional clock component
  • CHRONO provides a new layer of control on circadian molecular dynamics
  • The discovery has implications for understanding metabolic, psychiatric, and neoplastic disorders