Variability of chromosome structure in pathogenic fungi--of 'ends and odds'

Jonathan M Galazka1, Michael Freitag1

  • 1Department of Biochemistry and Biophysics, Center of Genome Research and Biocomputing, Oregon State University, Corvallis, OR 97331, United States.

Insights

Fungal supernumerary chromosomes, like B chromosomes, may share similar origins and epigenetic silencing mechanisms (H3K27me3). This suggests reconsidering the term "supernumerary" for diverse fungal accessory chromosomes and their associated gene clusters.

Area of Science:

  • * Mycology
  • * Epigenetics
  • * Molecular Biology

Background:

  • * Chromatin structure influences chromosome organization and maintenance.
  • * Filamentous fungi exhibit gene clustering for secondary metabolites and pathogenicity islands.
  • * Fungal accessory chromosomes, termed 'supernumerary', 'conditionally dispensable', or 'B chromosomes', often confer adaptive traits.

Purpose of the Study:

  • * To propose reconsidering the term "supernumerary chromosomes" for fungal accessory chromosomes.
  • * To explore potential shared evolutionary mechanisms between fungal accessory chromosomes and animal/plant B chromosomes.
  • * To investigate the role of histone modification H3K27me3 in fungal accessory chromosomes.

Main Methods:

  • * Comparative analysis of fungal chromosome structures.
  • * Investigation of epigenetic modifications, specifically H3 lysine 27 trimethylation (H3K27me3).
  • * Examination of gene organization within fungal accessory chromosomes.

Main Results:

  • * Fungal supernumerary chromosomes may arise through mechanisms similar to animal and plant B chromosomes.
  • * Both chromosome ends and fungal B chromosomes are enriched with the silencing histone modification H3K27me3.
  • * This suggests parallel epigenetic regulation in accessory chromosomes and gene clusters.

Conclusions:

  • * The term "supernumerary chromosome" should be reconsidered to encompass the diversity of fungal accessory chromosomes.
  • * Epigenetic silencing via H3K27me3 may play a crucial role in the regulation of fungal accessory chromosomes and associated gene clusters.
  • * Shared evolutionary and regulatory mechanisms may exist between fungal accessory chromosomes and B chromosomes in other eukaryotes.

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