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Variability of chromosome structure in pathogenic fungi--of 'ends and odds'
Jonathan M Galazka1, Michael Freitag1
1Department of Biochemistry and Biophysics, Center of Genome Research and Biocomputing, Oregon State University, Corvallis, OR 97331, United States.
Abstract:
Chromatin structure can affect the organization and maintenance of chromosomes. Recent discoveries in several filamentous fungi suggest mechanisms for the clustering and co-regulation of secondary metabolite genes or pathogenicity islands. An extreme case of this may be fungal 'accessory', 'conditionally dispensable', or 'supernumerary' chromosomes that often confer beneficial traits. Fungal supernumerary chromosomes may be derived by similar mechanisms as animal or plant B chromosomes, and we thus propose that this term should be reconsidered to capture the wide variety of fungal accessory chromosomes. In some fungi, both the 'ends' of chromosomes and these 'odd B chromosomes are enriched with a silencing histone modification, H3 lysine 27 trimethylation (H3K27me3), suggesting parallel mechanisms in evolving subtelomeric or B-chromosomal pathogenicity islands and secondary metabolite clusters (SMCs).
Insights
Fungal supernumerary chromosomes, like B chromosomes, may share similar origins and epigenetic silencing mechanisms (H3K27me3). This suggests reconsidering the term "supernumerary" for diverse fungal accessory chromosomes and their associated gene clusters.
Area of Science:
- * Mycology
- * Epigenetics
- * Molecular Biology
Background:
- * Chromatin structure influences chromosome organization and maintenance.
- * Filamentous fungi exhibit gene clustering for secondary metabolites and pathogenicity islands.
- * Fungal accessory chromosomes, termed 'supernumerary', 'conditionally dispensable', or 'B chromosomes', often confer adaptive traits.
Purpose of the Study:
- * To propose reconsidering the term "supernumerary chromosomes" for fungal accessory chromosomes.
- * To explore potential shared evolutionary mechanisms between fungal accessory chromosomes and animal/plant B chromosomes.
- * To investigate the role of histone modification H3K27me3 in fungal accessory chromosomes.
Main Methods:
- * Comparative analysis of fungal chromosome structures.
- * Investigation of epigenetic modifications, specifically H3 lysine 27 trimethylation (H3K27me3).
- * Examination of gene organization within fungal accessory chromosomes.
Main Results:
- * Fungal supernumerary chromosomes may arise through mechanisms similar to animal and plant B chromosomes.
- * Both chromosome ends and fungal B chromosomes are enriched with the silencing histone modification H3K27me3.
- * This suggests parallel epigenetic regulation in accessory chromosomes and gene clusters.
Conclusions:
- * The term "supernumerary chromosome" should be reconsidered to encompass the diversity of fungal accessory chromosomes.
- * Epigenetic silencing via H3K27me3 may play a crucial role in the regulation of fungal accessory chromosomes and associated gene clusters.
- * Shared evolutionary and regulatory mechanisms may exist between fungal accessory chromosomes and B chromosomes in other eukaryotes.
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