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Laser Capture Microdissection of Highly Pure Trabecular Meshwork from Mouse Eyes for Gene Expression Analysis
Published on: June 3, 2018
Bibliometric network analysis of glaucoma
1Department of Ophthalmology, Xinhua Hospital Affiliated to Shanghai Jiao Tong University School of Medicine, Shanghai, China.
Abstract:
Elevated intraocular pressure is recognized as the principal risk factor for development of optic nerve head (ONH) injury. Lamina cribrosa (LC) cells and astrocytes are two types of cells in the ONH. We attempted to identify more target genes and predict their underlying molecular mechanisms. In this study, we performed meta-analysis of the data from two microarray sets containing samples from LC cells and astrocytes each. Our analysis indicated that 47 differentially expressed genes (DEGs) had been identified, and 24 of them were used to construct a bibliometric network with other related genes, including GSTT1 ENO2, CPE, PTN, PTGDS, IL6, MMP1, and EGFR. Further, our results predicted these genes might be involved in glaucoma development through Toll-like receptor signaling pathway, ErbB signaling pathway, and glioma and other cancer-related pathways. Therefore our study provides potential target genes and pathways for future therapeutic studies of glaucoma.
Insights
This study identified 47 differentially expressed genes in optic nerve head cells, highlighting potential new targets like GSTT1 and ENO2 for glaucoma therapy. These genes may influence glaucoma through specific cell signaling pathways.
Area of Science:
- Ophthalmology
- Molecular Biology
- Genetics
Background:
- Elevated intraocular pressure is a primary risk factor for optic nerve head (ONH) injury.
- Lamina cribrosa (LC) cells and astrocytes are key cell types within the ONH.
- Identifying novel molecular targets is crucial for understanding and treating glaucoma.
Purpose of the Study:
- To identify novel target genes involved in optic nerve head injury.
- To predict the molecular mechanisms and pathways underlying glaucoma development.
- To provide potential therapeutic targets for glaucoma.
Main Methods:
- Meta-analysis of two microarray datasets from LC cells and astrocytes.
- Identification of differentially expressed genes (DEGs).
- Construction of a bibliometric network for identified DEGs and related genes.
Main Results:
- Identified 47 differentially expressed genes (DEGs).
- Constructed a bibliometric network involving 24 DEGs and related genes (e.g., GSTT1, ENO2, EGFR).
- Predicted involvement of these genes in Toll-like receptor, ErbB signaling, and cancer-related pathways.
Conclusions:
- The study identified potential novel genes and pathways implicated in glaucoma.
- These findings offer promising targets for future glaucoma therapeutic strategies.
- Understanding the molecular mechanisms of ONH injury is critical for developing effective treatments.
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