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Updated: Apr 28, 2026

Testing Targeted Therapies in Cancer using Structural DNA Alteration Analysis and Patient-Derived Xenografts
Published on: July 25, 2020
Identification of novel therapeutic targets in the PI3K/AKT/mTOR pathway in hepatocellular carcinoma using targeted
Filip Janku1, Ahmed O Kaseb, Apostolia M Tsimberidou
1Departments of Investigational Cancer Therapeutics. Phase I Clinical Trials Program.
Abstract:
Understanding genetic aberrations in cancer leads to discovery of new targets for cancer therapies. The genomic landscape of hepatocellular carcinoma (HCC) has not been fully described. Therefore, patients with refractory advanced/metastatic HCC referred for experimental therapies, who had adequate tumor tissue available, had targeted next generation sequencing (NGS) of their tumor samples using the Illumina HiSeq 2000 platform (Foundation One, Foundation Medicine, MA) and their treatment outcomes were analyzed. In total, NGS was obtained for 14 patients (median number of prior therapies, 1) with advanced/metastatic HCC. Of these 14 patients, 10 (71%) were men, 4 (29%) women, 6 (43%) had hepatitis B or C-related HCC. NGS revealed at least 1 molecular abnormality in 12 patients (range 0-8, median 2). Detected molecular aberrations led to putative activation of the PI3K/AKT/mTOR pathway (n=3 [mTOR, PIK3CA, NF1]), Wnt pathway (n=6 [CTNNA1, CTNNB1]), MAPK pathway (n=2 [MAP2K1, NRAS]), and aberrant DNA repair mechanisms, cell cycle control and apoptosis (n=18 [ATM, ATR, BAP1, CCND1, CDKN2A, CDK4, FGF3, FGF4, FGF19, MCL1, MDM2, RB1, TP53]). Of the 3 patients with molecular aberrations putatively activating the PI3K/AKT/mTOR pathway, 2 received therapies including a mTOR inhibitor and all demonstrated therapeutic benefit ranging from a partial response to minor shrinkage per RECIST (-30%, -15%; respectively). In conclusion, genomic alterations are common in advanced HCC. Refractory patients with alterations putatively activating the PI3K/AKT/mTOR pathway demonstrated early signals of clinical activity when treated with therapies targeting mTOR.
Insights
Genomic alterations are frequent in advanced hepatocellular carcinoma (HCC). Patients with PI3K/AKT/mTOR pathway aberrations showed promising responses to mTOR inhibitors, suggesting new therapeutic avenues for refractory HCC.
Area of Science:
- Oncology
- Genomics
- Molecular Biology
Background:
- Hepatocellular carcinoma (HCC) is a significant global health challenge.
- The genomic landscape of advanced and metastatic HCC remains incompletely understood.
- Identifying novel therapeutic targets is crucial for improving outcomes in refractory HCC patients.
Observation:
- Targeted next-generation sequencing (NGS) was performed on tumor samples from 14 patients with advanced/metastatic HCC.
- Molecular abnormalities were detected in 12 out of 14 patients, with a median of 2 aberrations per patient.
- Commonly altered pathways included PI3K/AKT/mTOR, Wnt, and MAPK, alongside disruptions in DNA repair, cell cycle control, and apoptosis.
Findings:
- Three patients with molecular aberrations putatively activating the PI3K/AKT/mTOR pathway were identified.
- Two of these patients received mTOR inhibitor therapy.
- Both patients treated with mTOR inhibitors demonstrated therapeutic benefit, including partial response and minor tumor shrinkage.
Implications:
- Genomic alterations are prevalent in advanced HCC, offering potential targets for treatment.
- Patients with PI3K/AKT/mTOR pathway aberrations may benefit from mTOR-targeted therapies.
- These findings support further investigation of mTOR inhibitors in refractory HCC with specific molecular alterations.
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