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Updated: Apr 27, 2026

Detection of Alternative Splicing During Epithelial-Mesenchymal Transition
Published on: October 9, 2014
Coordinated regulation of transcription and alternative splicing by the thyroid hormone receptor and its associating
Tetsurou Satoh1, Akiko Katano-Toki1, Takuya Tomaru1
1Department of Medicine and Molecular Science, Gunma University Graduate School of Medicine, Maebashi, Japan.
Abstract:
Emerging evidence has indicated that the transcription and processing of precursor mRNA (pre-mRNA) are functionally coupled to modulate gene expression. In collaboration with coregulators, several steroid hormone receptors have previously been shown to directly affect alternative pre-mRNA splicing coupled to hormone-induced gene transcription; however, the roles of the thyroid hormone receptor (TR) and its coregulators in alternative splicing coordinated with transcription remain unknown. In the present study, we constructed a luciferase reporter and CD44 alternative splicing (AS) minigene driven by a minimal promoter carrying 2 copies of the palindromic thyroid hormone-response element. We then examined whether TR could modulate pre-mRNA processing coupled to triiodothyronine (T3)-induced gene transcription using luciferase reporter and splicing minigene assays in HeLa cells. In the presence of cotransfected TRβ1, T3 increased luciferase activities along with the inclusion of the CD44 variable exons 4 and 5 in a dose- and time-dependent manner. In contrast, cotransfected TRβ1 did not affect the exon-inclusion of the CD44 minigene driven by the cytomegalovirus promoter. T3-induced two-exon inclusion was significantly increased by the cotransfection of the TR-associated protein, 150-kDa, a subunit of the TRAP/Mediator complex that has recently been shown to function as a splicing factor. In contrast, T3-induced two-exon inclusion was significantly decreased by cotransfection of the polypyrimidine tract-binding protein-associated splicing factor, which was previously shown to function as a corepressor of TR. These results demonstrated that liganded TR in cooperation with its associating cofactors could modulate alternative pre-mRNA splicing coupled to gene transcription.
Insights
Thyroid hormone receptor (TR) and its coregulators modulate gene expression by coupling transcription and pre-mRNA splicing. This study shows liganded TR influences alternative splicing of CD44 pre-mRNA coordinated with transcription.
Area of Science:
- Molecular Biology
- Gene Regulation
- RNA Splicing
Background:
- Transcription and pre-mRNA processing are coupled to regulate gene expression.
- Steroid hormone receptors influence alternative splicing linked to transcription.
- The role of thyroid hormone receptor (TR) in transcription-coupled splicing is unknown.
Purpose of the Study:
- To investigate if TR modulates pre-mRNA processing coupled to triiodothyronine (T3)-induced gene transcription.
- To examine the role of TR coregulators in this coupled process.
Main Methods:
- Constructed a luciferase reporter and CD44 alternative splicing minigene with a minimal promoter containing thyroid hormone-response elements.
- Utilized luciferase reporter and splicing minigene assays in HeLa cells.
- Examined the effects of TRβ1, T3, TRAP/Mediator complex subunit, and polypyrimidine tract-binding protein-associated splicing factor.
Main Results:
- T3 increased luciferase activity and CD44 variable exon inclusion in a dose- and time-dependent manner with TRβ1.
- TRβ1 did not affect CD44 minigene splicing driven by the CMV promoter.
- TRAP/Mediator subunit enhanced T3-induced exon inclusion, while polypyrimidine tract-binding protein-associated splicing factor decreased it.
Conclusions:
- Liganded TR, with its cofactors, modulates alternative pre-mRNA splicing coupled to gene transcription.
- TRAP/Mediator complex subunit acts as a splicing factor in this process.
- Polypyrimidine tract-binding protein-associated splicing factor functions as a TR corepressor influencing splicing.
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