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Mapping Alzheimer's Disease Variants to Their Target Genes Using Computational Analysis of Chromatin Configuration
Published on: January 9, 2020
Common GSAP promoter variant contributes to Alzheimer's disease liability
1Institutes of Brain Science, Fudan University, Shanghai, China; Department of Cellular and Genetic Medicine, School of Basic Medical Sciences, Fudan University, Shanghai, China; School of Biological Sciences, Fudan University, Shanghai, China.
Genetic variations in the GSAP gene, specifically SNP rs4727380, are linked to Alzheimer's disease (AD) risk. This discovery provides new genetic insights into AD etiology, particularly in APOE4 noncarriers.
Area of Science:
- Neuroscience
- Genetics
- Molecular Biology
Background:
- Alzheimer's disease (AD) is linked to toxic amyloid-β40-42 (Aβ40-42) peptide production.
- A novel γ-secretase activating protein (gSAP) increases Aβ40-42 production without affecting Notch cleavage.
Purpose of the Study:
- To investigate the genetic link between the GSAP gene, which encodes gSAP, and Alzheimer's disease.
- To determine if specific genetic variations in GSAP correlate with AD risk.
Main Methods:
- Correlated GSAP messenger RNA expression in human temporal cortex with genotypes of 6 linked single-nucleotide polymorphisms (SNPs) in the 5' region of GSAP.
- Conducted case-control studies in Han Chinese and Caucasian populations to assess the association of SNPs with AD diagnosis.
- Analyzed the association of SNP rs4727380 with AD diagnosis, considering APOE4 carrier status.
Main Results:
- GSAP gene expression correlated with genotypes of 6 linked SNPs in both Han Chinese and Caucasian populations.
- SNP rs4727380 significantly associated with AD diagnosis in both populations.
- The high-expression allele of rs4727380 was identified as the AD risk allele.
- rs4727380's association with AD was primarily observed in APOE4 noncarriers.
Conclusions:
- This study provides the first genetic evidence linking the GSAP gene to Alzheimer's disease liability.
- The findings highlight the role of gSAP and its genetic regulation in AD pathogenesis.
- SNP rs4727380 represents a potential genetic biomarker for AD risk, especially in APOE4 noncarriers.
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