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Removal of Exogenous Materials from the Outer Portion of Frozen Cores to Investigate the Ancient Biological Communities Harbored Inside
Published on: July 3, 2016
Genetic structure and biological properties of the first ancient multiresistance plasmid pKLH80 isolated from a
Mayya Petrova1, Anton Kurakov1, Natalya Shcherbatova1
1Institute of Molecular Genetics, Russian Academy of Sciences, Kurchatov sq. 2, Moscow 123182, Russia.
Abstract:
A novel multidrug-resistance plasmid, pKLH80, previously isolated from Psychrobacter maritimus MR29-12 found in ancient permafrost, was completely sequenced and analysed. In our previous studies, we focused on the pKLH80 plasmid region containing streptomycin and tetracycline resistance genes, and their mobilization with an upstream-located ISPpy1 insertion sequence (IS) element. Here, we present the complete sequence of pKLH80 and analysis of its backbone genetic structure, including previously unknown features of the plasmid's accessory region, notably a novel variant of the β-lactamase gene blaRTG-6. Plasmid pKLH80 was found to be a circular 14 835 bp molecule that has an overall G+C content of 40.3 mol% and encodes 20 putative ORFs. There are two distinctive functional modules within the plasmid backbone sequence: (i) the replication module consisting of repB and the oriV region; and (ii) the mobilization module consisting of mobA, mobC and oriT. All of the aforementioned genes share sequence identities with corresponding genes of different species of Psychrobacter. The plasmid accessory region contains antibiotic resistance genes and IS elements (ISPsma1 of the IS982 family, and ISPpy1 and ISAba14 of the IS3 family) found in environmental and clinical bacterial strains of different taxa. We revealed that the sequences flanking blaRTG-6 and closely related genes from clinical bacteria are nearly identical. This fact suggests that blaRTG-6 from the environmental strain of Psychrobacter is a progenitor of blaRTG genes of clinical bacteria. We also showed that pKLH80 can replicate in different strains of Acinetobacter and Psychrobacter genera. The roles of IS elements in the horizontal transfer of antibiotic resistance genes are examined and discussed.
Insights
The novel multidrug-resistance plasmid pKLH80 from ancient permafrost harbors unique genetic features. Its analysis reveals a novel beta-lactamase gene variant, suggesting a progenitor role in clinical antibiotic resistance.
Area of Science:
- Microbiology
- Genetics
- Molecular Biology
Background:
- The multidrug-resistance plasmid pKLH80 was previously isolated from Psychrobacter maritimus MR29-12 found in ancient permafrost.
- Previous studies focused on specific resistance genes and insertion sequences within pKLH80.
Purpose of the Study:
- To present the complete sequence and genetic structure analysis of the pKLH80 plasmid.
- To identify and analyze novel features in the plasmid's accessory region, including a new beta-lactamase gene variant.
Main Methods:
- Complete sequencing and bioinformatic analysis of the pKLH80 plasmid.
- Comparative sequence analysis of resistance genes and insertion elements.
- Replication studies in different bacterial genera (Acinetobacter and Psychrobacter).
Main Results:
- pKLH80 is a circular 14,835 bp molecule with 20 putative ORFs and a G+C content of 40.3 mol%.
- The plasmid contains distinct replication and mobilization modules with genes sharing identities with other Psychrobacter species.
- A novel beta-lactamase gene variant, blaRTG-6, was identified, with flanking sequences nearly identical to those in clinical bacteria, suggesting a progenitor role.
Conclusions:
- The pKLH80 plasmid possesses a unique genetic architecture, including a novel beta-lactamase gene.
- The findings suggest that the blaRTG-6 gene from this environmental plasmid may be a progenitor of clinically relevant beta-lactamase genes.
- Insertion sequence elements play a significant role in the horizontal transfer of antibiotic resistance genes.
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