Related Experiment Video
Updated: Apr 26, 2026

Assisted Selection of Biomarkers by Linear Discriminant Analysis Effect Size LEfSe in Microbiome Data
Published on: May 16, 2022
Local classification: Locally weighted-partial least squares-discriminant analysis (LW-PLS-DA)
Marta Bevilacqua1, Federico Marini1
1Department of Chemistry, University of Rome "La Sapienza", P.le Aldo Moro 5, I-00185, Rome, Italy.
A new locally weighted partial least squares-discriminant analysis (LW-PLS-DA) method offers accurate non-linear classification. This approach identifies similar training samples for robust discriminant analysis, achieving high accuracy on simulated and real-world data.
Area of Science:
- Chemometrics
- Machine Learning
- Data Mining
Background:
- Traditional methods struggle with non-linear classification tasks.
- Partial Least Squares-Discriminant Analysis (PLS-DA) is effective but often limited to linear relationships.
- Developing flexible and accurate non-linear classification algorithms is crucial for complex datasets.
Purpose of the Study:
- To extend the locally weighted partial least squares (LW-PLS) approach for non-linear classification.
- To introduce a discriminant version of LW-PLS, termed locally weighted-partial least squares-discriminant analysis (LW-PLS-DA).
- To evaluate the performance of LW-PLS-DA against existing non-linear classification methods.
Main Methods:
- The proposed LW-PLS-DA algorithm identifies nearest training samples to predict unknown samples.
- A PLS-DA model is built using only these selected calibration samples.
- A non-uniform, distance-based weighting scheme modulates the influence of training samples.
Main Results:
- LW-PLS-DA achieved over 99% classification accuracy on three simulated non-linear datasets.
- On a real-world dataset (rice variety classification), LW-PLS-DA yielded an average correct classification rate of 93%.
- Performance was comparable or superior to k-nearest neighbors, kernel-PLS-DA, and counterpropagation neural networks.
Conclusions:
- LW-PLS-DA is a simple, flexible, and accurate method for non-linear classification.
- The algorithm effectively handles datasets with high degrees of non-linearity.
- LW-PLS-DA demonstrates strong potential as an alternative to existing non-linear classification techniques.
Related Concept Videos
Residuals and Least-Squares Property
If the observed data point lies above the line, the residual is positive, and the line underestimates the actual data value for y. If the observed data point lies below the line, the residual is negative, and the line overestimates the actual data value for y.
The process of fitting the best-fit...
Calibration Curves: Linear Least Squares
For data that follow a straight line, the standard method for fitting is the linear...
Quadratic Models
Linear Approximation in Frequency Domain
In contrast, nonlinear systems do not inherently possess these properties. However, for small deviations around an operating point, a nonlinear system can often be approximated as linear....
Extraction: Partition and Distribution Coefficients
For extracting a solute from an aqueous phase into an...
Variation
When independent and dependent variables are plotted on a scatter plot, the slope of a line is a value that describes the rate of change between the two...

