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Updated: Apr 26, 2026

Identifying Caspases and their Motifs that Cleave Proteins During Influenza A Virus Infection
Published on: July 21, 2022
Selective inhibition of initiator versus executioner caspases using small peptides containing unnatural amino acids
Chris J Vickers1, Gonzalo E González-Páez, Kevin M Litwin
1Departments of Molecular and Experimental Medicine and Chemical Physiology, The Scripps Research Institute , La Jolla, California 92037, United States.
Abstract:
Caspases are fundamental to many essential biological processes, including apoptosis, differentiation, and inflammation. Unregulated caspase activity is also implicated in the development and progression of several diseases, such as cancer, neurodegenerative disorders, and sepsis. Unfortunately, it is difficult to determine exactly which caspase(s) of the 11 isoforms that humans express is responsible for specific biological functions. This lack of resolution is primarily due to highly homologous active sites and overlapping substrates. Currently available peptide-based inhibitors and probes are based on specificity garnered from peptide substrate libraries. For example, the canonical tetrapeptide LETD was discovered as the canonical sequence that is optimally recognized by caspase-8; however, LETD-based inhibitors and substrates promiscuously bind to other isoforms with equal affinity, including caspases-3, -6, and -9. In order to mitigate this problem, we report the identification of a new series of compounds that are >100-fold selective for inhibiting the initiator caspases-8 and -9 over the executioner caspases-3, -6, and -7.
Insights
Researchers developed novel compounds that selectively inhibit initiator caspases-8 and -9 over executioner caspases. This breakthrough aids in understanding caspase roles in diseases like cancer and neurodegeneration.
Area of Science:
- Biochemistry
- Molecular Biology
- Cell Biology
Background:
- Caspases are crucial enzymes regulating apoptosis, differentiation, and inflammation.
- Dysregulated caspase activity contributes to diseases including cancer, neurodegenerative disorders, and sepsis.
- Distinguishing specific caspase functions is challenging due to highly similar active sites and overlapping substrates among the 11 human isoforms.
Discussion:
- Existing peptide-based inhibitors often lack isoform specificity, binding promiscuously to multiple caspases.
- The tetrapeptide LETD, recognized for caspase-8, also binds to caspases-3, -6, and -9 with similar affinity.
- This lack of specificity hinders precise investigation of individual caspase roles in biological processes and disease.
Key Insights:
- A new series of compounds demonstrates >100-fold selectivity for inhibiting initiator caspases-8 and -9.
- These compounds effectively discriminate against executioner caspases-3, -6, and -7.
- This enhanced selectivity offers a valuable tool for dissecting specific caspase functions.
Outlook:
- The identified selective inhibitors can advance research into caspase-mediated diseases.
- These compounds may lead to more targeted therapeutic strategies for conditions involving aberrant caspase activity.
- Further studies will explore the therapeutic potential of these selective caspase inhibitors.
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The Intrinsic Apoptotic Pathway
The Extrinsic Apoptotic Pathway

