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Transfer hydrogenation as a redox process in nucleotides.

Florian Achrainer1, Vladimir N Emel'yanenko, Waled Tantawy

  • 1Department of Chemistry, LMU München , Butenandtstrasse 5-13, D-81377 München, Germany.

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We determined the heats of hydrogenation for nucleotide bases. Uracil is the most easily hydrogenated, suggesting potential hydrogen transfer within oligonucleotides.

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Area of Science:

  • Biochemistry
  • Physical Chemistry
  • Computational Chemistry

Background:

  • Nucleotide bases are fundamental components of nucleic acids.
  • Understanding their chemical reactivity is crucial for molecular biology and drug design.
  • Hydrogenation enthalpies provide insights into the energetic stability and reactivity of these molecules.

Purpose of the Study:

  • To determine the heats of hydrogenation for key nucleotide bases: uracil, thymine, cytosine, adenine, and guanine.
  • To compare the hydrogenation enthalpies of these bases with model compounds.
  • To investigate the energetic feasibility of hydrogen transfer in oligonucleotide systems.

Main Methods:

  • Employed a combined theoretical and experimental approach.
  • Calculated and measured heats of hydrogenation for the specified nucleotide bases.
  • Utilized computational chemistry methods for theoretical predictions.
  • Performed experimental hydrogenation reactions for validation.

Main Results:

  • Determined the heats of hydrogenation for uracil, thymine, cytosine, adenine, and guanine.
  • Identified uracil as the most easily hydrogenated base, followed by thymine and cytosine.
  • Observed that uracil's hydrogenation enthalpy is comparable to that of sugar model ketones and aldehydes.

Conclusions:

  • The determined heats of hydrogenation offer quantitative measures of nucleotide base reactivity.
  • Uracil's high susceptibility to hydrogenation suggests a potential role in biological hydrogen transfer mechanisms.
  • Findings indicate the possibility of near-thermoneutral hydrogen transfer between uracil and the oligonucleotide sugar-phosphate backbone.