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Inferring population structure and demographic history using Y-STR data from worldwide populations
Hongyang Xu1, Chuan-Chao Wang, Rukesh Shrestha
1CAS-MPG Partner Institute for Computational Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, 200031, Shanghai, China.
Global Y-chromosome short tandem repeat (STR) analysis reveals human population structure. African populations show oldest ancestry, while others exhibit recent expansions consistent with the serial founder model.
Area of Science:
- Human Population Genetics
- Evolutionary Biology
- Forensic Genetics
Background:
- The Y chromosome is crucial for tracing human evolutionary history.
- Previous Y-chromosome short tandem repeat (STR) studies had limited geographical scope or sample sizes.
- Understanding global population structure requires comprehensive Y-STR data.
Purpose of the Study:
- To investigate global human population structure and demographic history.
- To analyze Y-STR data from a large, diverse worldwide sample.
- To provide a detailed view of human male demographic history.
Main Methods:
- Utilized 17 Y-chromosomal STR markers.
- Analyzed data from 979 males across 44 worldwide populations.
- Calculated genetic distances, diversities, and time to most recent common ancestors (TMRCAs).
Main Results:
- Largest genetic distances observed between African and non-African populations.
- African populations exhibit oldest TMRCAs, largest effective sizes, and earliest expansions.
- American, Siberian, Melanesian, and Atayal populations show recent TMRCAs and smaller effective sizes, aligning with the serial founder model.
Conclusions:
- The study provides the most detailed global Y-STR dataset to date.
- Findings support the serial founder model for human migration out of Africa.
- The dataset is valuable for forensic applications and future population genetic studies.
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