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Selecting Multiple Biomarker Subsets with Similarly Effective Binary Classification Performances
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An alternative classification to mixture modeling for longitudinal counts or binary measures.

Fabien Subtil1,2,3,4, Olayidé Boussari1,2,3,4,5, Mathieu Bastard6

  • 11 Université de Lyon, Lyon, France.

Statistical Methods in Medical Research
|September 3, 2014
PubMed
Summary
This summary is machine-generated.

This study introduces a modified k-means algorithm for trajectory classification using deviance distance. This method improves patient classification for count and binary data where variance depends on the mean.

Keywords:
binary datacluster analysiscount datak-meanslikelihoodlongitudinal data

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Area of Science:

  • Biostatistics
  • Machine Learning in Healthcare
  • Clinical Research Methodology

Background:

  • Trajectory classification is crucial in clinical research for analyzing patient longitudinal data.
  • Traditional k-means clustering is suitable for continuous data but struggles with count and binary data due to mean-dependent variance.
  • Existing mixture modeling approaches may prioritize data modeling over classification accuracy.

Purpose of the Study:

  • To extend the k-means algorithm for trajectory classification of count and binary data.
  • To address the challenge of mean-dependent variance in these data types.
  • To introduce a novel distance metric for improved classification accuracy.

Main Methods:

  • Developed an extension of the k-means algorithm incorporating a deviance distance metric.
  • Justified the deviance distance approach through its analogy with classification likelihood.
  • Applied the modified algorithm to two datasets: one with binary data and one with count data.

Main Results:

  • Demonstrated significant differences in patient classification when using deviance distance compared to Euclidean distance.
  • The proposed method effectively handles the heterogeneity of within-group variability inherent in count and binary data.
  • Showcased the practical utility of the extended k-means algorithm in real-world clinical data scenarios.

Conclusions:

  • The extended k-means algorithm with deviance distance offers a more appropriate method for trajectory classification of count and binary data.
  • This approach enhances the accuracy and reliability of patient subgroup identification in clinical research.
  • The findings suggest a valuable alternative to traditional methods when dealing with non-normally distributed longitudinal data.