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PseKNC-General: a cross-platform package for generating various modes of pseudo nucleotide compositions

Wei Chen1, Xitong Zhang2, Jordan Brooker2

  • 1Department of Physics, School of Sciences, Center for Genomics and Computational Biology, Hebei United University, Tangshan 063009, China, Department of Computer Science, Virginia Tech, Blacksburg, VA 24060, School of Life Science and Technology, Bioinformatics and Computer-Aided Drug Discovery, Gordon Life Science Institute, Boston, MA 02478, Department of Electrical and Computer Engineering, University of Virginia, Charlottesville, VA 22904, Department of Computer Science, Vassar College, Poughkeepsie, NY 12604, USA, Excellence in Genomic Medicine Research, Key Laboratory for Neuro-Information of Ministry of Education, Center of Bioinformatics, School of Life Science and Technology, University of Electronic Science and Technology of China, Chengdu 610054, China and Excellence in Genomic Medicine Research, Center of Excellence in Genomic Medicine Research (CEGMR), King Abdulaziz University, Jeddah 21589, Saudi Arabia Department of Physics, School of Sciences, Center for Genomics and Computational Biology, Hebei United University, Tangshan 063009, China, Department of Computer Science, Virginia Tech, Blacksburg, VA 24060, School of Life Science and Technology, Bioinformatics and Computer-Aided Drug Discovery, Gordon Life Science Institute, Boston, MA 02478, Department of Electrical and Computer Engineering, University of Virginia, Charlottesville, VA 22904, Department of Computer Science, Vassar College, Poughkeepsie, NY 12604, USA, Excellence in Genomic Medicine Research, Key Laboratory for Neuro-Information of Ministry of Education, Center of Bioinformatics, School of Life Science and Technology, University of Electronic Science and Technology of China, Chengdu 610054, China and Excellence in Genomic Medicine Research, Center of Excellence in Genomic Medicine Research (CEGMR), King Abdulaziz University, Jeddah 21589, Saudi Arabia Department of Physics, School of Sciences, Center for Genomics and Computational Biology, Hebei United University, Tangshan 063009, Chin

Bioinformatics (Oxford, England)
|September 19, 2014
PubMed
Summary

This study introduces PseKNC-General, an open-source tool for rapid and accurate analysis of DNA and RNA sequences. It computes various nucleotide properties, aiding biological feature identification in the post-genomic era.

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