Pseudogene PTENP1 functions as a competing endogenous RNA to suppress clear-cell renal cell carcinoma progression

Gan Yu1, Weimin Yao1, Kiranmai Gumireddy2

  • 1Department of Urology, Tongji Hospital, Tongji Medical College, Huazhong University of Science and Technology, Wuhan, China. Institute of Urology, Tongji Hospital, Tongji Medical College, Huazhong University of Science and Technology, Wuhan, China.

Insights

PTENP1, a pseudogene of the PTEN tumor suppressor gene, is downregulated in clear-cell renal cell carcinoma (ccRCC). Its restoration suppresses ccRCC progression and sensitizes cells to chemotherapy.

Area of Science:

  • Oncology
  • Molecular Biology
  • Genetics

Background:

  • PTENP1 is a pseudogene of the PTEN tumor suppressor gene (TSG).
  • The role of PTENP1 in clear-cell renal cell carcinoma (ccRCC) remains uncharacterized.
  • PTENP1 downregulation, via methylation, is observed in ccRCC tissues and cells.

Purpose of the Study:

  • To investigate the function of PTENP1 in ccRCC.
  • To elucidate the regulatory relationship between PTENP1, PTEN, and miR21 in ccRCC.
  • To assess the therapeutic potential of PTENP1 in ccRCC.

Main Methods:

  • Quantitative real-time PCR and methylation-specific PCR were used to assess PTENP1 expression and methylation status.
  • Western blotting and luciferase reporter assays were employed to confirm the targeting of PTENP1 and PTEN by miR21.
  • In vitro and in vivo assays were conducted to evaluate the effects of PTENP1 overexpression on ccRCC cell proliferation, migration, invasion, tumor growth, and metastasis.
  • Chemotherapy sensitivity assays were performed to assess the impact of PTENP1 on treatment response.

Main Results:

  • PTENP1 expression is significantly downregulated in ccRCC tissues and cells, correlated with increased methylation.
  • miR21 directly targets and suppresses both PTENP1 and PTEN expression in ccRCC.
  • Overexpression of PTENP1 inhibits ccRCC cell proliferation, migration, invasion, tumor growth, and metastasis, and sensitizes cells to cisplatin and gemcitabine.
  • Low PTENP1 expression in patients correlates with reduced survival rates.

Conclusions:

  • PTENP1 functions as a tumor suppressor in ccRCC.
  • PTENP1 acts as a competing endogenous RNA (ceRNA) by sponging miR21, thereby relieving the suppression of PTEN and other targets.
  • PTENP1 represents a potential therapeutic target for ccRCC treatment.

Related Concept Videos

The Retinoblastoma Gene01:20

The Retinoblastoma Gene

Tumor suppressor genes are normal genes that can slow down cell division, repair DNA mistakes, or program the cells for apoptosis in case of irreparable damage. Hence, they play an essential role in preventing the proliferation of damaged cells.
The first-ever tumor suppressor gene called Rb was identified in retinoblastoma - a rare eye tumor in children. In inherited forms of the disease, a child inherits one defective copy of the Rb gene, which predisposes them to retinoblastoma. However,...
3.7K
Abnormal Proliferation02:23

Abnormal Proliferation

Under normal conditions, most adult cells remain in a non-proliferative state unless stimulated by internal or external factors to replace lost cells. Abnormal cell proliferation is a condition in which the cell's growth exceeds and is uncoordinated with normal cells. In such situations, cell division persists in the same excessive manner even after cessation of the stimuli, leading to persistent tumors. The tumor arises from the damaged cells that replicate to pass the damage to the...
4.0K
piRNA - Piwi-interacting RNAs02:57

piRNA - Piwi-interacting RNAs

PIWI-interacting RNAs, or piRNAs, are the most abundant short non-coding RNAs. More than 20,000 genes have been found in humans that code for piRNAs while only 2000 genes have been found for miRNAs. piRNAs can act at the transcriptional and post-transcriptional levels and have a vital role in silencing transposable elements present in germ cells. They are also involved in epigenetic silencing and activation. Previously, they were thought to function only in germ cells but new evidence suggests...
6.0K
Cell Specific Gene Expression01:58

Cell Specific Gene Expression

Multicellular organisms contain a variety of structurally and functionally distinct cell types, but the DNA in all the cells originated from the same parent cells. The differences in the cells can be attributed to the differential gene expression. Liver cells, whose functions include detoxification of blood, production of bile to metabolize fats, and synthesis of proteins essential for metabolism, must express a specific set of genes to perform their functions. Gene expression also varies with...
13.0K
mTOR Signaling and Cancer Progression03:03

mTOR Signaling and Cancer Progression

The mammalian target of rapamycin or mTOR protein was discovered in 1994 due to its direct interaction with rapamycin. The protein gets its name from a yeast homolog called TOR. The mTOR protein complex in mammalian cells plays a major role in balancing anabolic processes such as the synthesis of proteins, lipids, and nucleotides and catabolic processes, such as autophagy in response to environmental cues, such as availability of nutrients and growth factors.
The mTOR pathway or the...
3.6K
lncRNA - Long Non-coding RNAs02:39

lncRNA - Long Non-coding RNAs

In humans, more than 80% of the genome gets transcribed. However, only around 2% of the genome codes for proteins. The remaining part produces non-coding RNAs which includes ribosomal RNAs, transfer RNAs, telomerase RNAs, and regulatory RNAs, among other types. A large number of regulatory non-coding RNAs have been classified into two groups depending upon their length – small non-coding RNAs, such as microRNA, which are less than 200 nucleotides in length, and long non-coding RNA...
7.5K