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Spatial and Temporal Analysis of Active ERK in the C. elegans Germline
Published on: November 29, 2016
ETS1 is a genome-wide effector of RAS/ERK signaling in epithelial cells
Joshua P Plotnik1, Justin A Budka2, Mary W Ferris2
1Department of Biology, Indiana University, Bloomington, Indiana, USA.
Abstract:
The RAS/ERK pathway is commonly activated in carcinomas and promotes oncogenesis by altering transcriptional programs. However, the array of cis-regulatory elements and trans-acting factors that mediate these transcriptional changes is still unclear. Our genome-wide analysis determined that a sequence consisting of neighboring ETS and AP-1 transcription factor binding sites is enriched near cell migration genes activated by RAS/ERK signaling in epithelial cells. In vivo screening of candidate ETS proteins revealed that ETS1 is specifically required for migration of RAS/ERK activated cells. Furthermore, both migration and transcriptional activation through ETS/AP-1 required ERK phosphorylation of ETS1. Genome-wide mapping of multiple ETS proteins demonstrated that ETS1 binds specifically to enhancer ETS/AP-1 sequences. ETS1 occupancy, and its role in cell migration, was conserved in epithelial cells derived from multiple tissues, consistent with a chromatin organization common to epithelial cell lines. Genome-wide expression analysis showed that ETS1 was required for activation of RAS-regulated cell migration genes, but also identified a surprising role for ETS1 in the repression of genes such as DUSP4, DUSP6 and SPRY4 that provide negative feedback to the RAS/ERK pathway. Consistently, ETS1 was required for robust RAS/ERK pathway activation. Therefore, ETS1 has dual roles in mediating epithelial-specific RAS/ERK transcriptional functions.
Insights
The RAS/ERK pathway drives cancer by altering gene expression. Our study reveals ETS1 transcription factor is crucial for RAS/ERK-driven cell migration and gene regulation in epithelial cancers.
Area of Science:
- Molecular Biology
- Cancer Research
- Genomics
Background:
- The RAS/ERK pathway is frequently activated in carcinomas, promoting oncogenesis through transcriptional reprogramming.
- The specific cis-regulatory elements and trans-acting factors mediating these RAS/ERK-induced transcriptional changes remain largely undefined.
Purpose of the Study:
- To identify cis-regulatory elements and transcription factors involved in RAS/ERK-mediated transcriptional changes in epithelial cells.
- To elucidate the role of ETS1 in RAS/ERK pathway-driven cell migration and gene expression.
Main Methods:
- Genome-wide analysis to identify enriched transcription factor binding sites near cell migration genes.
- In vivo screening of ETS proteins to determine their role in cell migration.
- Genome-wide mapping of ETS protein occupancy and expression analysis.
Main Results:
- A conserved ETS/AP-1 transcription factor binding site motif was enriched near RAS/ERK-activated cell migration genes.
- ETS1 was identified as essential for RAS/ERK-activated cell migration, requiring ERK phosphorylation for its function.
- ETS1 binds to enhancer ETS/AP-1 sequences and plays dual roles in activating migration genes and repressing negative feedback regulators of the RAS/ERK pathway.
Conclusions:
- ETS1 is a key mediator of epithelial-specific RAS/ERK transcriptional functions, including cell migration and pathway activation.
- ETS1's dual role in gene activation and repression is critical for robust RAS/ERK signaling in epithelial cancers.
- Understanding ETS1's function provides insights into oncogenesis driven by the RAS/ERK pathway.
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