Computational science: shifting the focus from tools to models
Related Experiment Video
Updated: Apr 22, 2026

Constructing and Visualizing Models using Mime-based Machine-learning Framework
Published on: July 22, 2025
1Centre de Biophysique Moléculaire (UPR4301 CNRS), Rue Charles Sadron, 45071 Orléans, France ; Synchrotron SOLEIL, Division Expériences, St Aubin, 91192 Gif sur Yvette, France.
Abstract:
Computational techniques have revolutionized many aspects of scientific research over the last few decades. Experimentalists use computation for data analysis, processing ever bigger data sets. Theoreticians compute predictions from ever more complex models. However, traditional articles do not permit the publication of big data sets or complex models. As a consequence, these crucial pieces of information no longer enter the scientific record. Moreover, they have become prisoners of scientific software: many models exist only as software implementations, and the data are often stored in proprietary formats defined by the software. In this article, I argue that this emphasis on software tools over models and data is detrimental to science in the long term, and I propose a means by which this can be reversed.
Related Concept Videos
Mechanistic Models: Compartment Models in Algorithms for Numerical Problem Solving
In individual population analyses, different algorithms are employed, such as Cauchy's method, which uses a...
Mathematical Modeling: Problem Solving
Mechanistic Models: Compartment Models in Individual and Population Analysis
Mechanistic Models: Overview of Compartment Models
Typical Model Studies
Models, Theories, and Laws

