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Updated: Apr 22, 2026

Quantitative Immunofluorescence to Measure Global Localized Translation
Published on: August 22, 2017
Applying the ribopuromycylation method to detect nuclear translation
Alexandre David1, Jonathan W Yewdell
1CNRS UMR-5203; INSERM U661; UM1; UM2, Institut de Génomique Fonctionnelle, 141 Rue de la Cardonille, Montpellier, 34094, France, adavid@igf.cnrs.fr.
Abstract:
Protein translation in the nucleus has been controversial for more than four decades. To take a new look at this potentially important phenomenon, we adapted the RiboPuromycylation Method (RPM) which labels actively translating ribosomes in cells via standard immunofluorescence microscopy. RPM is based on puromycylation of nascent chains trapped on ribosomes by antibiotics which inhibit chain elongation, followed by cell permeabilization/fixation and detection of puromycylated nascent chains using a puromycin-specific monoclonal antibody. To adapt the method to the nucleus, we use NP-40 rather than digitonin to permeabilize cells because NP-40 enables better antibody penetration into the nucleoplasm and particularly the nucleoli, a region of high translation as shown by RPM.
Insights
Nuclear protein translation is re-examined using an adapted RiboPuromycylation Method (RPM). This technique visualizes actively translating ribosomes in the nucleus, particularly in nucleoli, confirming active protein synthesis occurs there.
Area of Science:
- Molecular Biology
- Cell Biology
- Biochemistry
Background:
- The occurrence of protein translation within the cell nucleus has been a long-standing debate for over 40 years.
- Understanding nuclear translation is crucial for comprehending gene expression regulation and cellular function.
Purpose of the Study:
- To investigate the controversial phenomenon of protein translation occurring in the cell nucleus.
- To adapt and apply the RiboPuromycylation Method (RPM) for visualizing active nuclear translation.
Main Methods:
- Adapted the RiboPuromycylation Method (RPM) for visualizing actively translating ribosomes.
- Utilized puromycylation of nascent polypeptide chains followed by immunofluorescence microscopy.
- Employed NP-40 for cell permeabilization to enhance antibody penetration into the nucleoplasm and nucleoli.
Main Results:
- The adapted RPM successfully labeled actively translating ribosomes within the cell nucleus.
- RPM revealed significant ribosomal activity, indicating active protein synthesis, particularly within the nucleoli.
- NP-40 permeabilization proved superior to digitonin for accessing nuclear and nucleolar regions.
Conclusions:
- The study provides compelling evidence for active protein translation occurring within the nucleus.
- The adapted RPM is an effective tool for studying nuclear translation dynamics.
- Nucleoli are identified as a significant site of nuclear protein synthesis.
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Ribosome Profiling
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Ribosome profiling has many applications, including in vivo monitoring of translation inside a particular organ or tissue type and quantifying new protein synthesis levels.
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