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Updated: Apr 21, 2026

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Embryo Microinjection and Electroporation in the Chordate Ciona intestinalis
Published on: October 16, 2016
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Tissue-specific genome editing in Ciona embryos by CRISPR/Cas9
Alberto Stolfi1, Shashank Gandhi2, Farhana Salek2
1Center for Developmental Genetics, Department of Biology, New York University, New York, NY 10003, USA albertostolfi@gmail.com lc121@nyu.edu.
Summary
The CRISPR/Cas9 gene editing tool effectively disrupted the Ebf gene in sea squirt embryos. This genetic manipulation revealed Ebf
Area of Science:
- * Molecular Biology
- * Developmental Biology
- * Genomics
Background:
- * The CRISPR/Cas9 system enables precise genetic modifications.
- * Understanding gene function in model organisms like Ciona intestinalis is crucial for biological research.
Purpose of the Study:
- * To utilize CRISPR/Cas9 for targeted gene disruption in Ciona intestinalis.
- * To investigate the function of the Ebf gene in embryonic development.
Main Methods:
- * Employed CRISPR/Cas9 technology to induce double-stranded breaks in the Ciona intestinalis genome.
- * Utilized electroporation for efficient delivery of CRISPR/Cas9 components.
- * Focused on tissue-specific disruption of the Ebf gene in synchronized embryos.
Main Results:
- * Successfully generated mutations in the Ebf gene in the F0 generation of Ciona embryos.
- * Demonstrated that Ebf is essential for the development of Islet-expressing motor ganglion neurons.
- * Showed Ebf's requirement for the formation of atrial siphon muscles.
Conclusions:
- * CRISPR/Cas9 is a highly effective and specific tool for rapid gene function screening in Ciona.
- * Endogenous Ebf is critical for specific neuronal and muscle cell fate during Ciona development.
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