Jove
Visualize
Contact Us
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Related Concept Videos

Survival Tree01:19

Survival Tree

496
Survival trees are a non-parametric method used in survival analysis to model the relationship between a set of covariates and the time until an event of interest occurs, often referred to as the "time-to-event" or "survival time." This method is particularly useful when dealing with censored data, where the event has not occurred for some individuals by the end of the study period, or when the exact time of the event is unknown.
 Building a Survival Tree
Constructing a...
496
Evolutionary Relationships through Genome Comparisons02:54

Evolutionary Relationships through Genome Comparisons

5.8K
Genome comparison is one of the excellent ways to interpret the evolutionary relationships between organisms. The basic principle of genome comparison is that if two species share a common feature, it is likely encoded by the DNA sequence conserved between both species. The advent of genome sequencing technologies in the late 20th century enabled scientists to understand the concept of conservation of domains between species and helped them to deduce evolutionary relationships across diverse...
5.8K
Phylogenetic Trees03:21

Phylogenetic Trees

41.5K
Phylogenetic trees come in many forms. It matters in which sequence the organisms are arranged from the bottom to the top of the tree, but the branches can rotate at their nodes without altering the information. The lines connecting individual nodes can be straight, angled, or even curved.
41.5K
Phylogenetic Trees03:21

Phylogenetic Trees

5.7K
5.7K
Phylogeny01:23

Phylogeny

47.1K
Phylogeny is concerned with the evolutionary diversification of organisms or groups of organisms. A group of organisms with a name is called a taxon (singular). Taxa (plural) can span different levels of the evolutionary hierarchy. For instance, the group containing all birds is a taxon (comprising the class Aves), and the group of all species of daisies (the genus Bellis) is a taxon. Phylogenies can likewise include just one genus (i.e., depict species relationships) or span an entire kingdom.
47.1K
Microbial Phylogeny01:28

Microbial Phylogeny

84
Understanding the evolutionary relationships among microorganisms is fundamental to microbial ecology and taxonomy. Phylogenetic trees are essential tools for inferring these relationships, relying primarily on comparative analyses of molecular sequences such as DNA, RNA, or proteins. In microbial studies, these trees typically depict the evolutionary paths of diverse bacterial and archaeal species by mapping genetic differences accumulated over time.Phylogenetic trees are composed of tips,...
84

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by
Same author

Report of a case of renal hilum Castleman disease complicated with Paget's disease of the breast.

Frontiers in medicine·2026
Same author

Pathogen spectrum of pulmonary infections in kidney transplant recipients and the diagnostic value of mNGS: a sputum and BALF study based on clinical decision-making.

Frontiers in cellular and infection microbiology·2026
Same author

Intratracheal Lactobacillus rhamnosus attenuates poultry-house PM<sub>2.5</sub>-induced lung inflammation in broilers by remodeling the pulmonary microbiota-metabolite axis.

Environmental pollution (Barking, Essex : 1987)·2026
Same author

Moderate and Severe Exacerbations and Healthcare Resource Utilization in Chinese Patients with COPD on Triple Therapy: A Retrospective Database Study.

Advances in therapy·2026
Same author

Bioinspired adhesive hydrogel incorporated with PDA@CuMOF for infected wound therapy.

Colloids and surfaces. B, Biointerfaces·2026
Same author

Lung microbiota-mediated biotransformation of mogroside preserves pulmonary barrier integrity and attenuates PM<sub>2.5</sub>-induced inflammation via NF-κB-Th17 modulations.

NPJ biofilms and microbiomes·2026
Same journal

Probabilistic Joint and Individual Variation Explained (ProJIVE) for Data Integration.

Journal of computational and graphical statistics : a joint publication of American Statistical Association, Institute of Mathematical Statistics, Interface Foundation of North America·2026
Same journal

fastkqr: A Fast Algorithm for Kernel Quantile Regression.

Journal of computational and graphical statistics : a joint publication of American Statistical Association, Institute of Mathematical Statistics, Interface Foundation of North America·2026
Same journal

Empirical Bayes Covariance Decomposition, and a Solution to the Multiple Tuning Problem in Sparse PCA.

Journal of computational and graphical statistics : a joint publication of American Statistical Association, Institute of Mathematical Statistics, Interface Foundation of North America·2026
Same journal

Joint Registration and Conformal Prediction for Partially Observed Functional Data.

Journal of computational and graphical statistics : a joint publication of American Statistical Association, Institute of Mathematical Statistics, Interface Foundation of North America·2026
Same journal

Efficient Decision Trees for Tensor Regressions.

Journal of computational and graphical statistics : a joint publication of American Statistical Association, Institute of Mathematical Statistics, Interface Foundation of North America·2026
Same journal

Distributed Nonparametric Regression with Heterogeneity Through Prediction-Based Aggregation.

Journal of computational and graphical statistics : a joint publication of American Statistical Association, Institute of Mathematical Statistics, Interface Foundation of North America·2026
See all related articles

Related Experiment Video

Updated: Apr 21, 2026

Author Spotlight: Advancements in X-ray CT Tool Chain for Tree Core Analysis
06:56

Author Spotlight: Advancements in X-ray CT Tool Chain for Tree Core Analysis

Published on: September 22, 2023

1.9K

Functional Data Analysis of Tree Data Objects.

Dan Shen1, Haipeng Shen2, Shankar Bhamidi2

  • 1Department of Statistics and Operations Research, University of North Carolina at Chapel Hill Chapel Hill, NC 27599 ; Department of Biostatistics, University of North Carolina at Chapel Hill Chapel Hill, NC 27599.

Journal of Computational and Graphical Statistics : a Joint Publication of American Statistical Association, Institute of Mathematical Statistics, Interface Foundation of North America
|October 28, 2014
PubMed
Summary
This summary is machine-generated.

This study connects tree data analysis to Functional Data Analysis (FDA) using novel representations and pruning techniques. It reveals new insights into brain artery structures, including age-related changes and the first statistically significant gender difference.

Keywords:
DiProPermDyck pathSupport treeTree pruningranch length

More Related Videos

A Practical Guide to Phylogenetics for Nonexperts
12:00

A Practical Guide to Phylogenetics for Nonexperts

Published on: February 5, 2014

35.2K
Using Phylogenetic Analysis to Investigate Eukaryotic Gene Origin
08:57

Using Phylogenetic Analysis to Investigate Eukaryotic Gene Origin

Published on: August 14, 2018

14.3K

Related Experiment Videos

Last Updated: Apr 21, 2026

Author Spotlight: Advancements in X-ray CT Tool Chain for Tree Core Analysis
06:56

Author Spotlight: Advancements in X-ray CT Tool Chain for Tree Core Analysis

Published on: September 22, 2023

1.9K
A Practical Guide to Phylogenetics for Nonexperts
12:00

A Practical Guide to Phylogenetics for Nonexperts

Published on: February 5, 2014

35.2K
Using Phylogenetic Analysis to Investigate Eukaryotic Gene Origin
08:57

Using Phylogenetic Analysis to Investigate Eukaryotic Gene Origin

Published on: August 14, 2018

14.3K

Area of Science:

  • Computational Biology
  • Statistical Analysis
  • Data Science

Background:

  • Analyzing data in non-Euclidean spaces, like tree structures, presents significant statistical challenges.
  • Existing methods often struggle with the inherent complexity and sparsity of tree data.

Purpose of the Study:

  • To establish a novel connection between tree data spaces and Functional Data Analysis (FDA).
  • To develop and apply new statistical methods for exploring the properties of tree-structured data.
  • To uncover new biological insights from tree-shaped data, specifically in the context of brain vasculature.

Main Methods:

  • Utilized Dyck path and branch length representations to map trees into Euclidean spaces.
  • Applied Functional Data Analysis (FDA) techniques to these representations for statistical exploration.
  • Implemented a tree pruning technique to address data sparsity and focus on population structures, paralleling scale-space analysis.

Main Results:

  • Demonstrated the utility of FDA for analyzing tree data through novel representations.
  • Scale-space analysis of brain artery trees revealed deeper structure-age relationships.
  • Identified the first statistically significant gender differences in brain artery structures using these methods.

Conclusions:

  • The integration of FDA with tree representations offers a powerful framework for analyzing complex biological structures.
  • Tree pruning and scale-space analysis provide effective tools for uncovering hidden patterns in sparse tree data.
  • This research opens new avenues for understanding anatomical variations and their correlations with demographic factors.