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Published on: February 28, 2018
[Dynamic changes of intestinal 16S rDNA metagenome in 5 infants]
Li-Ya Ma1, Min Zhang, Hui-Lin Wang
1Department of Neonatology, Shenzhen Bao'an Maternal and Child Health Hospital, Shenzhen, Guangdong 518133, China. lugj1111@aliyun.com.
Insights
The gut microbiome in healthy infants rapidly develops, showing increasing bacterial abundance and diversity from birth through the first year of life. Individual differences in gut bacteria composition are significant.
Area of Science:
- Microbiome research
- Infant gut health
- 16S ribosomal DNA (16S rDNA) sequencing
Context:
- The infant gut microbiome plays a crucial role in immune system development and overall health.
- Early life microbial colonization is influenced by various factors and can have long-term health implications.
Purpose:
- To track the dynamic changes in the intestinal 16S rDNA metagenome of healthy infants over the first year of life.
- To analyze the taxonomic composition, abundance, and diversity of gut bacteria in infants at different developmental stages.
Summary:
- High-throughput sequencing of 16S rDNA from fecal samples of 5 infants at 3 days, 1 month, 6 months, and 1 year revealed significant shifts in gut bacterial communities.
- Bacterial abundance and diversity, measured by Operational Taxonomic Unit (OTU) counts and alpha diversity indices (Shannon, Simpson), increased substantially over the first year.
- Dominant phyla included Proteobacteria, Firmicutes, Bacteroidetes, and Actinobacteria, with a notable increase in the number of bacterial families present over time.
Impact:
- This study highlights the rapid maturation of the infant gut microbiome during the first year of life.
- Findings underscore the presence of distinct individual variations in gut bacterial composition among infants.
- Understanding these dynamic changes is essential for assessing infant health and potential interventions.
Objective:
To investigate the dynamic changes of intestinal 16S rDNA metagenome in healthy infants.
Methods:
Seventeen fecal samples were collected at ages of 3 days, 1 month, 6 months and 1 year in 5 infants. Total bacterial DNAs were extracted and submitted high throughout sequencing on the V6 viable region of 16S rDNA. Tags and Operational Taxonomic Units (OTU) were then obtained and analysis of taxonomy, abundance and alpha diversity were performed.
Results:
In total 2,190.66 Mbp raw data in 17 samples were produced. The OTU numbers ranged from 36 to 308. The dominate phylum included Proteobacteria, Firmicutes and Bacteroidetes and Actinobacteria. The bacterial families>1% increased from only 2-4 per sample on day 3 to 7 at 1 or 6 months, 10 at 12 months. The average npShannon and Simpson index on day 3, at 1 month, 6 months and 1 year were 1.117, 1.460, 2.088, 2.50 and 0.443, 0.408, 0.229, 0.143 respectively.
Conclusions:
Infants' intestines harbor abounding bacterial genomes. Distinct individual differences exist in infants in terms of intestinal bacterial abundance and composition. The abundance and diversity of gut bacteria increase over time.
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