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Updated: Apr 19, 2026

Microarray-based Identification of Individual HERV Loci Expression: Application to Biomarker Discovery in Prostate Cancer
Published on: November 2, 2013
Is pathology necessary to predict mortality among men with prostate-cancer?
David Margel1,2, David R Urbach3,4,5,6,7, Lorraine L Lipscombe8,9,10
1Division of Urology, Rabin Medical Center, Beilinson Campus, 39 Jabotinsky, Petah Tikva, 4941492, Israel. sdmargel@gmail.com.
Insights
Adding pathology data to administrative databases significantly improves survival prediction models for prostate cancer (PC) patients. This enhances accuracy for both all-cause and PC-specific mortality, especially for the latter.
Area of Science:
- Epidemiology
- Biostatistics
- Oncology
Background:
- Administrative databases offer cost-effective survival prediction models.
- Chart review for pathological data is time-consuming and expensive.
- The study aimed to assess the added value of pathology data to administrative data for mortality prediction.
Purpose of the Study:
- To determine the incremental value of pathological data from chart abstraction.
- To enhance prediction models for all-cause and prostate cancer (PC)-specific mortality.
- To compare models using administrative data alone versus administrative data plus pathology information.
Main Methods:
- A cohort of 4001 men with diabetes and PC was identified using population-based data.
- Two Cox-proportional hazard models were compared using c-statistic and net reclassification improvement (NRI).
- Model 1: Administrative data covariates (age, co-morbidity, year, SES, rurality). Model 2: Model 1 + Gleason grade and cancer volume.
Main Results:
- The extended model (including pathology) improved 5-year all-cause mortality prediction accuracy (c-statistic 0.74 vs 0.70) with a 14.8% NRI.
- The extended model significantly improved 5-year PC-specific mortality prediction accuracy (c-statistic 0.85 vs 0.76) with a 28% NRI.
- Pathology data provided a substantial improvement, particularly for PC-specific mortality.
Conclusions:
- Pathology chart abstraction enhances the accuracy of mortality prediction models.
- The improvement is more pronounced for prostate cancer (PC)-specific mortality than for all-cause mortality.
- Integrating pathology data offers significant value for refining survival predictions in PC patients.
Background:
Statistical models developed using administrative databases are powerful and inexpensive tools for predicting survival. Conversely, data abstraction from chart review is time-consuming and costly. Our aim was to determine the incremental value of pathological data obtained from chart abstraction in addition to information acquired from administrative databases in predicting all-cause and prostate cancer (PC)-specific mortality.
Methods:
We identified a cohort of men with diabetes and PC utilizing population-based data from Ontario. We used the c-statistic and net-reclassification improvement (NRI) to compare two Cox- proportional hazard models to predict all-cause and PC-specific mortality. The first model consisted of covariates from administrative databases: age, co-morbidity, year of cohort entry, socioeconomic status and rural residence. The second model included Gleason grade and cancer volume in addition to all aforementioned variables.
Results:
The cohort consisted of 4001 patients. The accuracy of the admin-data only model (c-statistic) to predict 5-year all-cause mortality was 0.7 (95% CI 0.69-0.71). For the extended model (including pathology information) it was 0.74 (95% CI 0.73-0.75). This corresponded to a change in category of predicted probability of survival among 14.8% in the NRI analysis. The accuracy of the admin-data model to predict 5-year PC specific mortality was 0.76 (95% CI 0.74-0.78). The accuracy of the extended model was 0.85 (95% CI 0.83-0.87). Corresponding to a 28% change in the NRI analysis.
Conclusions:
Pathology chart abstraction, improved the accuracy in predicting all-cause and PC-specific mortality. The benefit is smaller for all-cause mortality, and larger for PC-specific mortality.
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