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High-resolution In Vivo Manual Segmentation Protocol for Human Hippocampal Subfields Using 3T Magnetic Resonance Imaging
Published on: November 10, 2015
Hippocampal spatial position evaluation on MRI for research and clinical practice
Jana Mrzílkova1, Antonella Koutela1, Martina Kutová1
1Institute of Anatomy, Third Faculty of Medicine, Charles University, Ruská 87, 100 00 Prague 10, Czech Republic.
Reorienting brain MRI scans significantly impacts hippocampal area measurements. For consistent 2D studies, use native MRI scans or reorient to the anterior commissure-posterior commissure (AC-PC) axis.
Area of Science:
- Neuroimaging
- Radiology
- Medical Image Analysis
Background:
- Magnetic Resonance Imaging (MRI) is crucial for volumetric studies.
- Brain reorientation on MRI scans is common in clinical practice and research.
- The impact of different reorientation planes on hippocampal measurements is not fully understood.
Purpose of the Study:
- To investigate the effect of different brain reorientation planes on 2D hippocampal area measurements.
- To compare measurements from native MRI scans with those reoriented to the anterior commissure-posterior commissure (AC-PC) and hippocampal horizontal long axis (hipp) planes.
- To assess rotation variability in Alzheimer's disease patients and healthy controls.
Main Methods:
- Manual measurement of hippocampal area and temporal horn using ImageJ software.
- Reorientation of native MRI scans into AC-PC and hipp planes.
- Comparison of area measurements across different reorientation planes in 23 Alzheimer's patients and 31 healthy controls.
Main Results:
- Hippocampal area was largest in native (nat) scans, smaller in AC-PC reoriented scans, and smallest in hipp reoriented scans.
- Area measurements including the temporal horn showed similar trends: nat > AC-PC > hipp.
- Significant rotation variability (up to 35°) was observed in both AC-PC and hipp axes, as well as skull rotation.
Conclusions:
- The measured hippocampal area in native MRI is comparable to that reoriented to the AC-PC axis.
- For 2D hippocampal area studies and clinical practice, using native MRI or AC-PC reoriented scans is recommended.
- Brain and skull rotation variability is substantial and independent of the chosen reorientation plane.
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