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Updated: Apr 19, 2026

Mosaic Zebrafish Transgenesis for Functional Genomic Analysis of Candidate Cooperative Genes in Tumor Pathogenesis
Published on: March 31, 2015
ALK mutations confer differential oncogenic activation and sensitivity to ALK inhibition therapy in neuroblastoma
Scott C Bresler1, Daniel A Weiser2, Peter J Huwe3
1Department of Biochemistry and Biophysics, University of Pennsylvania Perelman School of Medicine, Philadelphia, PA 19104, USA; Graduate Group in Biochemistry and Molecular Biophysics, University of Pennsylvania Perelman School of Medicine, Philadelphia, PA 19104, USA; Medical Scientist Training Program, University of Pennsylvania Perelman School of Medicine, Philadelphia, PA 19104, USA.
Abstract:
Genetic studies have established anaplastic lymphoma kinase (ALK), a cell surface receptor tyrosine kinase, as a tractable molecular target in neuroblastoma. We describe comprehensive genomic, biochemical, and computational analyses of ALK mutations across 1,596 diagnostic neuroblastoma samples. ALK tyrosine kinase domain mutations occurred in 8% of samples--at three hot spots and 13 minor sites--and correlated significantly with poorer survival in high- and intermediate-risk neuroblastoma. Biochemical and computational studies distinguished oncogenic (constitutively activating) from nononcogenic mutations and allowed robust computational prediction of their effects. The mutated variants also showed differential in vitro crizotinib sensitivities. Our studies identify ALK genomic status as a clinically important therapeutic stratification tool in neuroblastoma and will allow tailoring of ALK-targeted therapy to specific mutations.
Insights
Anaplastic lymphoma kinase (ALK) mutations in neuroblastoma are linked to poorer survival. Identifying these ALK mutations can help tailor ALK-targeted therapies for better patient outcomes.
Area of Science:
- Oncology
- Genetics
- Biochemistry
Background:
- Anaplastic lymphoma kinase (ALK) is a validated molecular target in neuroblastoma.
- Understanding ALK mutations is crucial for developing targeted therapies.
Purpose of the Study:
- To comprehensively analyze ALK mutations in neuroblastoma.
- To correlate ALK mutations with patient survival and treatment response.
Main Methods:
- Genomic, biochemical, and computational analyses were performed on 1,596 neuroblastoma samples.
- ALK mutations were identified and characterized.
- Computational models predicted the effects of mutations.
Main Results:
- ALK tyrosine kinase domain mutations were found in 8% of samples.
- Mutations occurred at specific hot spots and minor sites.
- ALK mutations significantly correlated with poorer survival in high- and intermediate-risk neuroblastoma.
- Oncogenic and nononcogenic mutations were distinguished.
- Mutated ALK variants showed differential sensitivity to crizotinib.
Conclusions:
- ALK genomic status is a key tool for therapeutic stratification in neuroblastoma.
- Tailoring ALK-targeted therapy based on specific mutations is feasible.
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