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Updated: Apr 18, 2026

Neutron Crystallography Data Collection and Processing for Modelling Hydrogen Atoms in Protein Structures
Published on: December 1, 2020
Diazole-based powdered cocrystal featuring a helical hydrogen-bonded network: structure determination from PXRD,
Mariana Sardo1, Sérgio M Santos1, Artem A Babaryk2
1Department of Chemistry, CICECO, University of Aveiro, 3810-193 Aveiro, Portugal.
We discovered a novel 1:1 cocrystal of 3,5-dimethyl-1H-pyrazole (dmpz) and 4,5-dimethyl-1H-imidazole (dmim). This cocrystal forms a unique 1D helicoidal network stabilized by hydrogen bonds and CH···π interactions.
Area of Science:
- Crystal engineering
- Supramolecular chemistry
- Solid-state chemistry
Background:
- Cocrystals are crystalline solids composed of two or more molecular components.
- Azoles, such as pyrazoles and imidazoles, are important heterocyclic compounds with diverse applications.
- Understanding intermolecular interactions is crucial for designing novel crystalline materials.
Purpose of the Study:
- To synthesize and characterize a new equimolar cocrystal of 3,5-dimethyl-1H-pyrazole (dmpz) and 4,5-dimethyl-1H-imidazole (dmim).
- To elucidate the structural features, including hydrogen bonding and weak interactions, that stabilize the cocrystal.
- To investigate the effect of molecular structure on cocrystal formation and network topology.
Main Methods:
- Powder X-ray diffraction (PXRD) for crystal structure determination.
- High-resolution solid-state Nuclear Magnetic Resonance (NMR) spectroscopy (1D/2D 13C, 15N, 1H) for local structural insights.
- Molecular modeling and Density Functional Theory (DFT) calculations for structure refinement and analysis.
- Synthesis of various imidazole derivatives to study methylation effects.
Main Results:
- A novel 1:1 cocrystal (dmpz···dmim) was successfully synthesized and its structure determined.
- The cocrystal exhibits an atypical 1D helicoidal hydrogen-bonded network, resembling alpha-helix structures in proteins.
- NH···N hydrogen bonds and CH···π contacts were identified as key stabilizing interactions.
- DFT refinement significantly improved the structural model derived from PXRD data.
- Only 4,5-dimethyl-1H-imidazole among tested derivatives formed a cocrystal with dmpz, highlighting the role of substituent placement.
Conclusions:
- The dmpz···dmim cocrystal represents the first example of a cocrystal formed between two different azoles.
- The study demonstrates the successful rational design of cocrystals with specific network topologies through control of intermolecular interactions.
- The findings provide valuable insights into the self-assembly principles governing the formation of complex supramolecular structures.
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