Learning HMMs for nucleotide sequences from amino acid alignments

Carlos N Fischer1, Claudia M A Carareto1, Renato A C dos Santos1

  • 1Department of Statistics, Applied Maths, and Computer Science, UNESP - São Paulo State University, Rio Claro, SP, Brazil, Department of Biology, UNESP-São Paulo State University, São José do Rio Preto, SP, Brazil, Institute of Biosciences, UNESP-São Paulo State University, Rio Claro, SP, Brazil, Department of Computer Science, UFSCar-Federal University of São Carlos, São Carlos, SP, Brazil, Department of Computer Science, USP-University of São Paulo, São Carlos, SP, Brazil, Department of Computer Science, KU Leuven, Leuven, Belgium and Department of Public Health and Primary Care, KU Leuven Kulak, Kortrijk, Belgium.

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