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A Workflow for the Quantitative Assessment of the Endophytic and Epiphytic Bacterial Microbiomes of the Bark of Populus trichocarpa
Published on: June 27, 2025
Microbacterium populi sp. nov., isolated from Populus×euramericana bark
Yong Li1, Tao Wang2,1, Wei Fang1
1The Key Laboratory of State Forestry Administration on Forest Protection, Research Institute of Forest Ecology, Environment and Protection, Chinese Academy of Forestry, Beijing 100091, PR China.
Abstract:
Five non-spore-forming, aerobic and Gram-stain-positive bacterial strains, 10-107-8(T), 1C-4, NHI3_6, 4107_1_2, and 3D-3, were isolated from Populus × euramericana bark collected in Puyang City, Henan Province, PR China. The isolates grew at 15-40 °C and pH 5-10. The optimum temperature and pH for growth were 30 °C and pH 8.0, respectively. Chemotaxonomic features included MK-10 and MK-11 as major menaquinones (type strain); predominating iso- and anteiso-branched cellular fatty acids; diphosphatidylglycerol and phosphatidylglycerol as major polar lipids (type strain); ornithine as the principal diamino acid of the cell-wall peptidoglycan (type strain); glycolyl type as cell-wall acyl type; and DNA G+C content of 66.8-67.6 mol%. These features were consistent with classification in the genus Microbacterium . Analysis of 16S rRNA gene sequence data indicated that the five isolates belonged to the genus Microbacterium and were closely related to Microbacterium halotolerans . A high 16S rRNA gene sequence similarity of 96.97% to M. halotolerans YIM 70130(T) was observed. The five isolates showed less than 96.20% 16S rRNA gene sequence similarity to the other species of the genus Microbacterium with validly published names. DNA-DNA relatedness of the five isolates with M. halotolerans JCM 13013(T) ranged from 35.62% to 44.36%. Considering the results of 16S rRNA gene sequence analysis and the physiological and biochemical characteristics, we propose that the five strains should be assigned to a novel species of the genus Microbacterium . The name proposed for the five strains is Microbacterium populi sp. nov., and the type strain is 10-107-8(T) ( =CFCC 11275(T) =KCTC 29152(T)).
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