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Updated: Apr 17, 2026

Visualizing and Quantifying Endonuclease-Based Site-Specific DNA Damage
Published on: August 21, 2021
Topoisomerase-mediated chromosomal break repair: an emerging player in many games
Mohamed E Ashour1, Reham Atteya2, Sherif F El-Khamisy1
11] Krebs Institute, Department of Molecular Biology and Biotechnology, University of Sheffield, Sheffield, S10 2TN, UK. [2] Center for Genomics, Helmy Institute, Zewail City of Science and Technology, Giza 12588, Egypt.
Abstract:
The mammalian genome is constantly challenged by exogenous and endogenous threats. Although much is known about the mechanisms that maintain DNA and RNA integrity, we know surprisingly little about the mechanisms that underpin the pathology and tissue specificity of many disorders caused by defective responses to DNA or RNA damage. Of the different types of endogenous damage, protein-linked DNA breaks (PDBs) are emerging as an important player in cancer development and therapy. PDBs can arise during the abortive activity of DNA topoisomerases, a class of enzymes that modulate DNA topology during several chromosomal transactions, such as gene transcription and DNA replication, recombination and repair. In this Review, we discuss the mechanisms underpinning topoisomerase-induced PDB formation and repair with a focus on their role during gene transcription and the development of tissue-specific cancers.
Insights
Protein-linked DNA breaks (PDBs) are crucial in cancer. This review explores how topoisomerases cause PDBs during transcription and their role in tissue-specific cancers, impacting therapy.
Area of Science:
- Genomics
- Molecular Biology
- Cancer Research
Background:
- Mammalian genomes face constant DNA and RNA damage.
- Mechanisms of DNA/RNA integrity are known, but disorder pathology and tissue specificity remain unclear.
- Protein-linked DNA breaks (PDBs) are significant endogenous DNA damage, implicated in cancer development and therapy.
Purpose of the Study:
- To review mechanisms of topoisomerase-induced PDB formation and repair.
- To focus on the role of PDBs during gene transcription.
- To explore the link between PDBs and tissue-specific cancers.
Main Methods:
- Literature review of DNA topoisomerase function.
- Analysis of PDB formation and repair pathways.
- Examination of PDBs in the context of gene transcription and cancer pathology.
Main Results:
- DNA topoisomerases can induce PDBs through abortive activity.
- PDBs play a role in gene transcription processes.
- Topoisomerase-induced PDBs are linked to the development of tissue-specific cancers.
Conclusions:
- Understanding PDB formation and repair is critical for cancer therapy.
- The role of PDBs in gene transcription contributes to their pathological significance.
- Targeting topoisomerase-induced PDBs may offer novel therapeutic strategies for specific cancers.
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