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Mutagenesis and Functional Selection Protocols for Directed Evolution of Proteins in E. coli
Published on: March 16, 2011
Evolvability as a function of purifying selection in TEM-1 β-lactamase
Michael A Stiffler1, Doeke R Hekstra1, Rama Ranganathan2
1Green Center for Systems Biology, University of Texas Southwestern Medical Center, Dallas, TX 75390-9050, USA.
Evolvability, the ability to generate beneficial mutations, depends on enzyme activity and selection strength. High enzyme activity and fluctuating environments may promote the evolution of new functions in biological systems.
Area of Science:
- Evolutionary biology
- Biochemistry
- Molecular evolution
Background:
- Evolvability, the capacity for beneficial heritable variation, is crucial for biological systems.
- The origins and environmental modulation of evolvability remain underexplored.
Purpose of the Study:
- To systematically examine the origins and environmental modulation of evolvability.
- To analyze the fitness effects of mutations in TEM-1 β-lactamase under different selection pressures.
Main Methods:
- Analysis of all single mutations (4,997 variants) in TEM-1 β-lactamase.
- Selection for wild-type function (ampicillin resistance) and a new function (cefotaxime resistance).
- Assessment of mutation tolerance and its dependence on selection strength and enzyme activity.
Main Results:
- Mutation tolerance in TEM-1 β-lactamase is bimodal and contingent on purifying selection strength.
- A steep, non-linear relationship exists between ampicillin resistance, biochemical activity, and fitness.
- New functions (cefotaxime resistance) arise from mutations that vary in effect based on ampicillin levels, highlighting selection's role.
Conclusions:
- Evolvability is controlled by an excess of enzymatic activity relative to selection strength.
- Fluctuating environments may favor the selection of high-activity enzymes, enhancing evolvability.
- The capacity to evolve new functions is intrinsically linked to environmental selection pressures.
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