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Glycan array data management at Consortium for Functional Glycomics.

Maha Venkataraman1, Ram Sasisekharan, Rahul Raman

  • 1Department of Biological Engineering, Koch Institute of Integrative Cancer Research, Massachusetts Institute of Technology, MIT Building 76, Room 158, 500 Main Street, Cambridge, MA, 02139, USA.

Methods in Molecular Biology (Clifton, N.J.)
|March 11, 2015
PubMed
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Glycomics, the study of complex glycans, reshapes biology by revealing glycan-protein interactions. The Consortium for Functional Glycomics (CFG) provides tools and data for glycomics research, advancing fields like immunology and cancer biomarker discovery.

Area of Science:

  • Glycosciences
  • Systems Biology
  • Biochemistry

Background:

  • Glycomics, the study of complex glycans, is crucial for understanding biological functions mediated by glycan-protein interactions.
  • The Consortium for Functional Glycomics (CFG) was established to advance glycomics research through large-scale initiatives.
  • Significant progress in glycomics has been made over the past decade, generating novel reagents, technologies, and diverse datasets.

Purpose of the Study:

  • To outline methodologies for capturing data from glycan array experiments.
  • To present online tools developed by the CFG for accessing and visualizing glycan array data.
  • To highlight the importance of glycomics in various scientific disciplines.

Main Methods:

  • Development of novel reagents and technologies for glycomics analyses.

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  • Generation of diverse datasets encompassing glycan-protein interactions, cellular analysis, and whole organism phenotyping.
  • Screening of glycan-protein interactions using glycan array platforms.

    • Main Results:

    • Datasets generated have enhanced understanding of glycan diversity and structure-function relationships.
    • Glycan array screening has become prominent, demonstrating the significance of glycomics.
    • CFG has developed tools for data capture, access, and visualization.

    Conclusions:

    • Glycomics is a pivotal field in post-genomics biology, impacting multiple research areas.
    • The CFG's contributions have facilitated a deeper understanding of glycan roles in health and disease.
    • Accessible data and visualization tools are essential for advancing glycomics research and its applications.