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Assays for Validating Histone Acetyltransferase Inhibitors
Published on: August 6, 2020
Histone Demethylase LSD1 Inhibitors Prevent Cell Growth by Regulating Gene Expression in Esophageal Squamous Cell
Isamu Hoshino1, Yasunori Akutsu2, Kentaro Murakami2
1Department of Frontier Surgery, Graduate School of Medicine, Chiba University, Chiba, Japan. i_hosino@chiba-u.jp.
Background:
The expression of genes can be influenced by the balance of histone acetylation and/or histone demethylation, with an imbalance of these processes possibly observed in many cancers. The histone demethylase LSD1 inhibitor activity is associated with selective transcriptional regulation and alterations in the gene expression. However, the exact mechanisms underlying the antitumor effects of LSD1 inhibitors are not fully understood.
Methods:
The antitumor effects of NCL1, an LSD1 inhibitor, in esophageal squamous cell cancer (ESCC) cell lines were evaluated. A comprehensive analysis of the changes in the gene expression in ESCC cell lines induced by NCL1 was carried out using a microarray analysis. A loss-of-function assay using a siRNA analysis was performed to examine the oncogenic function of the gene.
Results:
NCL1 strongly inhibited the cell growth of T.Tn and TE2 ESCC cells and induced apoptosis. According to the microarray analysis, 81 genes in the T.Tn cells and 149 genes in the TE2 cells were up- or down-regulated 2-fold or more by NCL1 exposure. Among these genes, 27 were contained in both cell lines and exhibited similar expression patterns. PHLDB2, one of the genes down-regulated by NCL1, was overexpressed in the ESCC tumor tissues. Moreover, a high expression level of PHLDB2 was found to be significantly correlated with poor prognosis.
Conclusions:
The present observations of the comprehensive analysis of the gene expression levels provide insight into the mechanisms underlying the antitumor effects of LSD1 inhibitors in ESCC patients.
Insights
The LSD1 inhibitor NCL1 suppressed esophageal squamous cell cancer (ESCC) growth and induced apoptosis. Gene expression analysis revealed PHLDB2 as a key gene targeted by NCL1, correlating with poor prognosis in ESCC patients.
Area of Science:
- Molecular Biology
- Cancer Research
- Epigenetics
Background:
- Gene expression is regulated by histone acetylation and demethylation.
- Imbalances in these processes are linked to cancer development.
- The precise mechanisms of histone demethylase LSD1 inhibitors' antitumor effects remain unclear.
Purpose of the Study:
- To investigate the antitumor effects of the LSD1 inhibitor NCL1 in esophageal squamous cell cancer (ESCC).
- To comprehensively analyze gene expression changes induced by NCL1 in ESCC cells.
- To elucidate the role of specific genes in the observed antitumor activity.
Main Methods:
- Treatment of ESCC cell lines (T.Tn and TE2) with NCL1.
- Microarray analysis to assess global gene expression changes.
- Loss-of-function assays using siRNA to evaluate gene function.
Main Results:
- NCL1 significantly inhibited ESCC cell proliferation and induced apoptosis.
- NCL1 altered the expression of numerous genes, with 27 common to both cell lines studied.
- PHLDB2, a gene downregulated by NCL1, was overexpressed in ESCC tumors and associated with poor prognosis.
Conclusions:
- NCL1 demonstrates significant antitumor activity in ESCC.
- Gene expression profiling provides insights into the mechanisms of LSD1 inhibitors.
- PHLDB2 may serve as a potential biomarker for prognosis in ESCC.
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