Related Experiment Video
Updated: Apr 15, 2026

18:30
RNA-seq Analysis of Transcriptomes in Thrombin-treated and Control Human Pulmonary Microvascular Endothelial Cells
Published on: February 13, 2013
22.5K
Macrophage epoxygenase determines a profibrotic transcriptome signature.
Jacques Behmoaras1, Ana Garcia Diaz2, Lara Venda2
1Centre for Complement and Inflammation Research (CCIR), Imperial College London, W12 0NN, London, UK.
Journal of Immunology (Baltimore, Md. : 1950)
|April 5, 2015
Summary
The epoxygenase Cyp2j4 in macrophages drives a profibrotic response by regulating fibronectin. Deleting Cyp2j4 in rats increases kidney fibrosis, highlighting its role in inflammatory conditions.
Area of Science:
- Biochemistry
- Cell Biology
- Immunology
Background:
- Epoxygenases, part of the cytochrome P450 family, produce epoxyeicosatrienoic acids with known anti-inflammatory effects.
- The specific role of epoxyeicosanoic acids in macrophage function remains largely unexplored.
- Macrophage dysfunction is implicated in various inflammatory and fibrotic diseases.
Purpose of the Study:
- To investigate the role of epoxyeicosanoic acids in macrophage function.
- To determine the expression profile of epoxyeicosanoic acids in rodent and human macrophages.
- To elucidate the impact of targeting the major rat macrophage epoxygenase, Cyp2j4, on macrophage phenotype and fibrotic processes.
Main Methods:
- High-throughput RNA sequencing was employed to analyze gene expression in primary macrophages.
- Zinc-finger nuclease technology was used for targeted gene deletion of Cyp2j4 in rat macrophages.
- In vivo studies involved unilateral ureter obstruction and crescentic glomerulonephritis models in rats.
- Quantitative proteomics (liquid chromatography-tandem mass spectrometry) was utilized to assess protein abundance.
Main Results:
- Cyp2j4 deletion in macrophages led to reduced epoxyeicosanoic acid synthesis and increased peroxisome proliferator-activated receptor-γ levels.
- Cyp2j4-deficient macrophages exhibited a profibrotic transcriptome with overexpression of extracellular matrix genes, notably fibronectin.
- In vivo, Cyp2j4 knockout rats showed increased type I collagen and fibronectin in kidneys following injury models.
Conclusions:
- The rat epoxygenase Cyp2j4 is identified as a key regulator of a profibrotic macrophage transcriptome.
- Epoxygenase activity directly influences fibronectin expression in both rat and human macrophages.
- Targeting Cyp2j4 may offer therapeutic potential for inflammatory and fibrotic conditions involving macrophage activation.
Related Concept Videos
Pharmacogenetics of Phase I Enzymes: Cytochrome P450 Isozymes
239
Cytochrome P450 (CYP450) enzymes are a superfamily of heme-containing monooxygenases that play a pivotal role in Phase I drug metabolism by catalyzing oxidation and reduction reactions.These enzymes transform lipophilic xenobiotics into more hydrophilic metabolites, facilitating subsequent Phase II conjugation and eventual excretion. The CYP450 family is classified into families (e.g., CYP1–CYP3) and subfamilies (e.g., CYP2A, CYP2C), based on amino acid sequence homology.CYP450...
239
Ribosome Profiling
4.4K
Ribosome profiling or ribo-sequencing is a deep sequencing technique that produces a snapshot of active translation in a cell. It selectively sequences the mRNAs protected by ribosomes to get an insight into a cell’s translation landscape at any given point in time.
Applications of ribosome profiling
Ribosome profiling has many applications, including in vivo monitoring of translation inside a particular organ or tissue type and quantifying new protein synthesis levels.
The technique...
Applications of ribosome profiling
Ribosome profiling has many applications, including in vivo monitoring of translation inside a particular organ or tissue type and quantifying new protein synthesis levels.
The technique...
4.4K
Regulation of the Unfolded Protein Response
3.2K
Inositol-requiring kinase one or IRE1 is the most conserved eukaryotic unfolded protein response (UPR) receptor. It is a type I transmembrane protein kinase receptor with a distinctive site-specific RNase activity. As the binding mechanics of the misfolded proteins with the N-terminal domain of IRE-1 are unclear, three binding models — direct, indirect, and allosteric -- are proposed for receptor activation. Nevertheless, it is known that once a misfolded protein associates with IRE1, it...
3.2K
