Jove
Visualize
Contact Us
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Related Concept Videos

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by
Same author

Mixed Reality Surgical Navigation System for Liver Interventions with Comprehensive Validation using Subsurface Target Localization.

IEEE transactions on bio-medical engineering·2026
Same author

Quantifying the Localization of Histological Staining Markers within the GI Epithelial Unit Axis: A Gastrointestinal Spatial Pathology Plugin for ImageJ.

bioRxiv : the preprint server for biology·2026
Same author

Radiomic Carotid Plaque Features Integrated into Machine Learning Models for Cardiovascular Risk Prediction.

Ultrasound in medicine & biology·2026
Same author

Functional Imaging for Regenerative Medicine: Tracking Vascularization of Intestinal Scaffolds.

Tissue engineering. Part A·2026
Same author

Towards quality control and harmonization of deep learning CT radiomics: An in-silico feasibility study with virtual colorectal liver metastases.

Medical physics·2026
Same author

Immune Subtypes and Survival in Patients with Primary Glioma.

medRxiv : the preprint server for health sciences·2026

Related Experiment Video

Updated: Apr 14, 2026

Targeting Neuronal Fiber Tracts for Deep Brain Stimulation Therapy Using Interactive, Patient-Specific Models
14:14

Targeting Neuronal Fiber Tracts for Deep Brain Stimulation Therapy Using Interactive, Patient-Specific Models

Published on: August 12, 2018

9.5K

Near Real-Time Computer Assisted Surgery for Brain Shift Correction Using Biomechanical Models.

Kay Sun1, Thomas S Pheiffer1, Amber L Simpson1

  • 1Department of Biomedical Engineering, Vanderbilt University, Nashville, TN 37235, USA.

IEEE Journal of Translational Engineering in Health and Medicine
|April 28, 2015
PubMed
Summary

This article describes a new computer-based system designed to update surgical navigation images during brain surgery. Because the brain changes shape once the skull is opened, traditional preoperative scans become inaccurate. This system uses a laser scanner to measure surface changes and quickly updates the surgical map, helping surgeons navigate more accurately in real time.

Keywords:
Biomechanical modelingbrain shiftimage-guided surgerysparse dataimage-guided surgerybiomechanical modelingintraoperative imagingneurosurgical navigation

Frequently Asked Questions

More Related Videos

Pedicle Screw Placement Using an Augmented Reality Head-Mounted Display in a Porcine Model
06:18

Pedicle Screw Placement Using an Augmented Reality Head-Mounted Display in a Porcine Model

Published on: May 24, 2024

2.9K
Translational Brain Mapping at the University of Rochester Medical Center: Preserving the Mind Through Personalized Brain Mapping
13:12

Translational Brain Mapping at the University of Rochester Medical Center: Preserving the Mind Through Personalized Brain Mapping

Published on: August 12, 2019

46.8K

Related Experiment Videos

Last Updated: Apr 14, 2026

Targeting Neuronal Fiber Tracts for Deep Brain Stimulation Therapy Using Interactive, Patient-Specific Models
14:14

Targeting Neuronal Fiber Tracts for Deep Brain Stimulation Therapy Using Interactive, Patient-Specific Models

Published on: August 12, 2018

9.5K
Pedicle Screw Placement Using an Augmented Reality Head-Mounted Display in a Porcine Model
06:18

Pedicle Screw Placement Using an Augmented Reality Head-Mounted Display in a Porcine Model

Published on: May 24, 2024

2.9K
Translational Brain Mapping at the University of Rochester Medical Center: Preserving the Mind Through Personalized Brain Mapping
13:12

Translational Brain Mapping at the University of Rochester Medical Center: Preserving the Mind Through Personalized Brain Mapping

Published on: August 12, 2019

46.8K

Area of Science:

  • Neurosurgery outcomes research within Brain Shift Correction medicine
  • Computational biomechanics and medical imaging informatics

Background:

Traditional neurosurgical navigation relies on static preoperative scans that lose accuracy once the cranium is opened. This discrepancy arises because the brain undergoes significant physical deformation during the procedure. Gravity, edema, and pharmacological interventions cause the organ to shift from its original position. No prior work had resolved the need for rapid, automated updates to these navigational maps. Surgeons currently lack efficient tools to track these dynamic changes during active operations. That uncertainty drove the development of methods to account for such mechanical and physiological alterations. Previous approaches often suffered from slow processing speeds that hindered their practical application. This gap motivated the creation of a streamlined pipeline that integrates preoperative modeling with intraoperative data collection.

Purpose Of The Study:

The primary aim of this study is to develop a computational pipeline for near real-time correction of brain deformation during surgical procedures. Surgeons face significant challenges when preoperative images become inaccurate after the skull is opened. This shift occurs due to mechanical factors like gravity and physiological changes such as edema or drug-induced swelling. The researchers sought to automate the processing steps required to provide updated navigational information. They aimed to create a system that functions efficiently within the constraints of an active operating room. By generating a preoperative atlas of potential deformations, the team intended to facilitate rapid reconstruction of volumetric changes. The study addresses the need for a practical tool that accounts for these dynamic alterations in brain shape. This motivation drove the development of a workflow that integrates sparse intraoperative measurements with precomputed models.

Main Methods:

The team developed a computational pipeline that combines preoperative modeling with intraoperative data acquisition. They generated a patient-specific brain model and an atlas of potential deformations using diagnostic image volumes. During the operation, they utilized an optically tracked laser range scanner to record cortical surface positions. This approach relies on an inverse modeling framework to reconstruct volumetric changes from the collected surface measurements. The researchers analyzed five distinct surgical cases to evaluate the timing of their workflow. They measured the duration of each step, from initial scanner setup to the final image deformation. The study design focuses on automating the processing steps to simplify the integration of these models into the operating room. This review approach emphasizes the efficiency of the pipeline in a clinical setting.

Main Results:

The total update process, encompassing scanner positioning, data collection, inverse modeling, and image deformation, required approximately 11 to 13 minutes. Postcortical surface data acquisition was completed in roughly 4.5 minutes. The authors successfully reconstructed full volumetric brain displacements by matching sparse measurements to precomputed atlas solutions. This pipeline effectively updated preoperative images to reflect the intraoperative shifted state of the brain. The researchers observed that the system automates the processing steps previously requiring manual intervention. Their analysis of five surgical cases confirms the feasibility of near real-time correction during active procedures. The findings indicate that the current hardware and software configurations support rapid performance. The data show that the workflow provides a practical solution for addressing gravity-induced and physiological deformations.

Conclusions:

The authors demonstrate that their computational pipeline effectively updates navigational images within a clinically relevant timeframe. Their findings suggest that integrating laser scanning with inverse modeling provides a viable solution for intraoperative correction. The researchers propose that this workflow minimizes the delay between data acquisition and image deformation. Their analysis of five surgical cases indicates that the total update process remains under fifteen minutes. The team reports that this system successfully maps volumetric displacements based on sparse cortical surface measurements. They emphasize that the current hardware and software configurations are ready for implementation in standard operating environments. The authors claim that future refinements to the workflow will further enhance the speed and performance of these updates. This study provides a framework for improving the accuracy of image-guided procedures through near real-time biomechanical modeling.

The system employs an inverse modeling framework that reconstructs full volumetric brain deformations. By matching intraoperative cortical surface measurements to precomputed atlas solutions, the software updates preoperative images to reflect the current shifted state of the organ.

The researchers utilize an optically tracked portable laser range scanner to gather sparse data from the cortical surface. This device captures the physical position of the brain after the skull is opened, providing the necessary input for the deformation model.

The authors state that the preoperative pipeline must be generated within one day of surgery if interim changes occur between diagnosis and the operation. This timeline ensures the atlas of potential deformations remains relevant for the specific patient.

The system relies on sparse cortical surface data to guide the reconstruction of full volumetric displacements. This data type allows the software to rapidly adjust the preoperative images without requiring a full intraoperative magnetic resonance imaging scan.

The total update process, including scanner positioning, data acquisition, inverse model processing, and image deformation, takes approximately 11 to 13 minutes. Postcortical surface data acquisition alone requires about 4.5 minutes to complete.

The researchers propose that their workflow identifies specific hardware and software improvements that will enhance performance. They suggest that these modifications will facilitate more efficient and accurate surgical navigation in future clinical applications.