Related Experiment Video
Updated: May 6, 2026

Fecal Microbiota Transplantation via Colonoscopy for Recurrent C. difficile Infection
Published on: December 8, 2014
Fecal Microbiota Transplantation for Clostridium difficile Infection: A Systematic Review
Background:
The role of fecal microbiota transplantation (FMT) for Clostridium difficile infection (CDI) is not well-known.
Purpose:
To assess the efficacy, comparative effectiveness, and harms of FMT for CDI.
Data Sources:
MEDLINE (1980 to January 2015), Cochrane Library, and ClinicalTrials.gov, followed by hand-searching references from systematic reviews and identified studies.
Study Selection:
Any study of FMT to treat adult patients with CDI; case reports were only used to report harms.
Data Extraction:
Data were extracted by 1 author and verified by another; 2 authors independently assessed risk of bias and strength of evidence.
Data Synthesis:
Two randomized, controlled trials (RCTs); 28 case-series studies; and 5 case reports were included. Two RCTs and 21 case-series studies (516 patients receiving FMT) reported using FMT for patients with recurrent CDI. A high proportion of treated patients had symptom resolution; however, the role of previous antimicrobials is unclear. One RCT comparing FMT with 2 control groups (n = 43) reported resolution of symptoms in 81%, 31%, and 23% of the FMT, vancomycin, or vancomycin-plus-bowel lavage groups, respectively (P < 0.001 for both control groups vs. FMT). An RCT comparing FMT route (n = 20) reported no difference between groups (60% in the nasogastric tube group and 80% in the colonoscopy group; P = 0.63). Across all studies for recurrent CDI, symptom resolution was seen in 85% of cases. In 7 case-series studies of patients with refractory CDI, symptom resolution ranged from 0% to 100%. Among 7 patients treated with FMT for initial CDI, results were mixed.
Limitation:
Most studies were uncontrolled case-series studies; only 2 RCTs were available for analysis.
Conclusion:
Fecal microbiota transplantation may have a substantial effect with few short-term adverse events for recurrent CDI. Evidence is insufficient on FMT for refractory or initial CDI treatment and on whether effects vary by donor, preparation, or delivery method.
Primary Funding Source:
U.S. Department of Veterans Affairs.
Insights
Fecal microbiota transplantation (FMT) shows promise for recurrent Clostridium difficile infection (CDI), with high symptom resolution rates. However, more research is needed for initial or refractory CDI.
Area of Science:
- Microbiology
- Gastroenterology
- Infectious Diseases
Background:
- The efficacy of fecal microbiota transplantation (FMT) for treating Clostridium difficile infection (CDI) requires further elucidation.
- Current evidence for FMT in CDI management is limited, particularly concerning comparative effectiveness and safety profiles.
Purpose of the Study:
- To evaluate the efficacy, comparative effectiveness, and safety of FMT in adult patients diagnosed with CDI.
- To synthesize available evidence from randomized controlled trials and observational studies to inform clinical practice.
Main Methods:
- Systematic literature search of MEDLINE, Cochrane Library, and ClinicalTrials.gov (1980-2015).
- Inclusion of studies on FMT for adult CDI patients; case reports were utilized solely for harm assessment.
- Data extraction and risk of bias assessment performed independently by two authors.
Main Results:
- Two randomized controlled trials (RCTs) and 28 case series were analyzed, involving 516 patients with recurrent CDI.
- FMT demonstrated high symptom resolution rates (85% in recurrent CDI), significantly outperforming vancomycin and bowel lavage in one RCT.
- Evidence for FMT in initial or refractory CDI remains insufficient, with variable outcomes reported.
Conclusions:
- Fecal microbiota transplantation (FMT) appears effective and safe for short-term management of recurrent CDI.
- High-quality evidence from RCTs is limited, necessitating further investigation into optimal FMT protocols and its application in non-recurrent CDI.
- The study highlights the need for more research on donor, preparation, and delivery method variations in FMT for CDI.
Related Concept Videos
Drugs for Treatment of Diarrhea-Predominant IBS
Two specific drugs used in the treatment are alosetron (Lotronex) and eluxadoline (Viberzi). Alosetron, a 5-HT3 antagonist, works by slowing the movement of stools in the gut, reducing bowel...
Bacterial Flora of the Large Intestine
The normal gut flora of the colon plays a critical role in generating essential vitamins such as vitamins K, B5, and B7.
Introduction to the Human Microbiota
Development of Human Microbiota
Microbiota of the Large Intestine

