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Updated: Apr 13, 2026

Single-Molecule Real-Time Visualization of DNA Unwinding by CMG Helicase
Published on: September 27, 2024
Arabidopsis thaliana MCM3 single subunit of MCM2-7 complex functions as 3' to 5' DNA helicase
Irum Rizvi1, Nirupam Roy Choudhury1, Narendra Tuteja2
1Plant Molecular Biology Group, International Centre for Genetic Engineering and Biotechnology, Aruna Asaf Ali Marg, New Delhi, 110067, India.
Abstract:
Minichromosome maintenance 2-7 (MCM2-7) proteins are conserved eukaryotic replicative factors essential for the DNA replication at its initiation and elongation step, and act as a licensing factor. The MCM2-7 and MCM4/6/7subcomplex exhibit DNA helicase activity, and are therefore regarded as the replicative helicase. The MCM proteins have not been studied in detail in plant system. Here, we present the biochemical characterization of Arabidopsis thaliana MCM3 single subunit and show that it exhibits in vitro unwinding and ATPase activities. AtMCM3 shows a greater unwinding activity with 5' forked partial DNA duplex substrate as compared to 3' forked and non-forked substrates. ATP and magnesium ion are indispensable for its DNA helicase activity. Specifically, ATP and dATP are the preferred nucleotides for its unwinding activity. The directionality of the AtMCM3 has been determined to be in 3' to 5' direction. The oligomerization status of AtMCM3 single subunit protein indicates that it is present in different multimeric forms. The unraveling of the helicase activity of AtMCM3 will provide better insights into the plant DNA replication.
Insights
Minichromosome maintenance 3 (AtMCM3) is a key plant DNA replication factor. This study reveals its in vitro DNA helicase and ATPase activities, crucial for understanding plant DNA replication mechanisms.
Area of Science:
- Molecular Biology
- Biochemistry
- Plant Science
Background:
- Minichromosome maintenance (MCM) proteins are essential eukaryotic DNA replication factors.
- The MCM2-7 complex functions as the replicative helicase, but its role in plants is not fully understood.
- MCM3 is a subunit of the MCM2-7 complex.
Purpose of the Study:
- To biochemically characterize the Arabidopsis thaliana MCM3 (AtMCM3) single subunit.
- To investigate the DNA helicase and ATPase activities of AtMCM3.
- To elucidate the functional properties of AtMCM3 in plant DNA replication.
Main Methods:
- In vitro biochemical assays to assess DNA unwinding and ATPase activity.
- Use of various DNA substrates (forked and non-forked) to determine substrate specificity.
- Nucleotide and ion dependency studies for helicase activity.
- Analysis of protein oligomerization status.
Main Results:
- AtMCM3 exhibits significant in vitro DNA helicase and ATPase activities.
- Optimal unwinding activity was observed with a 5' forked DNA substrate.
- ATP and magnesium ions are essential for AtMCM3 helicase activity, with ATP and dATP being preferred nucleotides.
- AtMCM3 functions as a 3' to 5' helicase.
- AtMCM3 exists in multiple multimeric forms.
Conclusions:
- AtMCM3 possesses intrinsic DNA helicase and ATPase activities, confirming its role in plant DNA replication.
- The characterization of AtMCM3 provides crucial insights into the mechanism of plant DNA replication.
- Understanding AtMCM3 function contributes to the broader knowledge of eukaryotic DNA replication.
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