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Published on: August 22, 2019
Apoptosis Triggers Specific, Rapid, and Global mRNA Decay with 3' Uridylated Intermediates Degraded by DIS3L2
Marshall P Thomas1, Xing Liu1, Jennifer Whangbo1
1Program in Cellular and Molecular Medicine, Boston Children's Hospital, Boston, MA 02115, USA.
Abstract:
Apoptosis is a tightly coordinated cell death program that damages mitochondria, DNA, proteins, and membrane lipids. Little is known about the fate of RNA as cells die. Here, we show that mRNAs, but not noncoding RNAs, are rapidly and globally degraded during apoptosis. mRNA decay is triggered early in apoptosis, preceding membrane lipid scrambling, genomic DNA fragmentation, and apoptotic changes to translation initiation factors. mRNA decay depends on mitochondrial outer membrane permeabilization and is amplified by caspase activation. 3' truncated mRNA decay intermediates with nontemplated uridylate-rich tails are generated during apoptosis. These tails are added by the terminal uridylyl transferases (TUTases) ZCCHC6 and ZCCHC11, and the uridylated transcript intermediates are degraded by the 3' to 5' exonuclease DIS3L2. Knockdown of DIS3L2 or the TUTases inhibits apoptotic mRNA decay, translation arrest, and cell death, whereas DIS3L2 overexpression enhances cell death. Our results suggest that global mRNA decay is an overlooked hallmark of apoptosis.
Insights
Messenger RNA (mRNA) is rapidly degraded during programmed cell death (apoptosis), a process dependent on specific enzymes. This mRNA decay is a key event in apoptosis, influencing cell death outcomes.
Area of Science:
- Cell Biology
- Molecular Biology
- Biochemistry
Background:
- Apoptosis involves cellular damage, but the fate of RNA during this process is largely unknown.
- Previous research has focused on DNA, protein, and lipid damage during apoptosis.
Purpose of the Study:
- To investigate the degradation of RNA during apoptosis.
- To identify the mechanisms and key players involved in RNA decay during programmed cell death.
Main Methods:
- Analysis of mRNA and noncoding RNA degradation during apoptosis.
- Investigating the role of mitochondrial outer membrane permeabilization and caspase activation.
- Identifying enzymes involved in RNA tailing (terminal uridylyl transferases - TUTases) and degradation (exonucleases).
- Utilizing knockdown and overexpression of key enzymes (DIS3L2, ZCCHC6, ZCCHC11) to assess their impact.
Main Results:
- Messenger RNAs (mRNAs) are rapidly and globally degraded during apoptosis, unlike noncoding RNAs.
- Apoptotic mRNA decay is an early event, preceding DNA fragmentation and translation initiation factor changes.
- The process depends on mitochondrial outer membrane permeabilization and caspase activation.
- Specific enzymes, terminal uridylyl transferases (TUTases) ZCCHC6 and ZCCHC11, add uridylate tails to mRNA fragments, which are then degraded by the exonuclease DIS3L2.
- Inhibition of TUTases or DIS3L2, or overexpression of DIS3L2, significantly impacts mRNA decay, translation arrest, and cell death.
Conclusions:
- Global mRNA decay is a significant and previously overlooked hallmark of apoptosis.
- The TUTase-DIS3L2 pathway is crucial for executing apoptotic mRNA decay and subsequent cell death.
- Targeting this pathway could offer new strategies for modulating apoptosis.
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