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Related Concept Videos

Regulation of the Unfolded Protein Response01:31

Regulation of the Unfolded Protein Response

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Inositol-requiring kinase one or IRE1 is the most conserved eukaryotic unfolded protein response (UPR) receptor. It is a type I transmembrane protein kinase receptor with a distinctive site-specific RNase activity. As the binding mechanics of the misfolded proteins with the N-terminal domain of IRE-1 are unclear, three binding models — direct, indirect, and allosteric -- are proposed for receptor activation. Nevertheless, it is known that once a misfolded protein associates with IRE1, it...
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The organelle-specific signaling sequences direct proteins synthesized in the cytosol to their final destination like ER, mitochondria, peroxisomes, etc. Some of the proteins directed to ER are then trafficked via vesicles to other organelles within the cell or the extracellular environment through the Golgi complex. For example, the rough ER synthesizes soluble proteins for transportation to the lysosomes or secretion out of the cell. It can also synthesize transmembrane proteins that can...
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Modification of secretory and transmembrane proteins entering the rough ER begins in the ER lumen. These modifications aid in protein folding and stabilize the acquired tertiary structure. Protein modifications in the rough ER co-occur at different stages of protein folding.
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The ER is the hub of protein synthesis in a cell. It has robust systems to quality control protein folding and also for degradation of terminally misfolded proteins. Under normal conditions, a small proportion of misfolded proteins that cannot be salvaged need to be transported to the cytoplasm by the ER-associated degradation or ERAD pathways. However, if the ERAD cannot handle the misfolded proteins, the cell activates the unfolded protein response or UPR to adjust the protein folding...
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Prokaryotic Transcriptional Activators and Repressors01:58

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Prokaryotic Transcriptional Activators and Repressors01:58

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The organization of prokaryotic genes in their genome is notably different from that of eukaryotes. Prokaryotic genes are organized, such that the genes for proteins involved in the same biochemical process or function are located together in groups. This group of genes, along with their regulatory elements, are collectively known as an operon. The functional genes in an operon are transcribed together to give a single strand of mRNA known as polycistronic mRNA.
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Related Experiment Video

Updated: Apr 10, 2026

RNA Secondary Structure Prediction Using High-throughput SHAPE
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HIV Rev Assembly on the Rev Response Element (RRE): A Structural Perspective.

Jason W Rausch1, Stuart F J Le Grice2

  • 1Reverse Transcriptase Biochemistry Section, Basic Research Program, Frederick National Laboratory for Cancer Research, Frederick, MD 21702, USA. rauschj@mail.nih.gov.

Viruses
|June 16, 2015
PubMed
Summary

The HIV-1 Rev protein binds the Rev response element (RRE) on viral RNA, facilitating nuclear export for replication. New structural and biochemical studies advance understanding of these interactions for antiviral therapy development.

Keywords:
Crm1HIVRRERevRev response elementnuclear export complex

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Identification of Nucleolar Factors During HIV-1 Replication Through Rev Immunoprecipitation and Mass Spectrometry
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Area of Science:

  • Molecular Biology
  • Virology
  • Structural Biology

Background:

  • Human Immunodeficiency Virus type 1 (HIV-1) replication relies on accessory proteins, including Rev.
  • The Rev protein is crucial for the nuclear export of unspliced and singly spliced viral RNA transcripts.
  • Rev interacts with the Rev response element (RRE), a structured RNA element within the viral env gene.

Purpose of the Study:

  • To review recent advances in understanding the molecular interactions between HIV-1 Rev and the RRE.
  • To discuss the structural and biochemical basis of Rev-RNA and Rev-Rev complex formation.
  • To explore the implications of these findings for developing novel antiviral therapies targeting HIV-1.

Main Methods:

  • X-ray crystallography to determine high-resolution structures of Rev-RRE complexes.
  • Small-angle X-ray scattering (SAXS) to study the overall shape and assembly of Rev-RNA complexes.
  • Single particle electron microscopy (SPEM) for visualizing complex structures.
  • Biochemical and genetic methodologies to probe interaction interfaces and functional consequences.

Main Results:

  • Detailed structural insights into the multi-copy assembly of Rev protein onto the structured RRE RNA.
  • Elucidation of key Rev-Rev and Rev-RNA interfaces governing complex formation and stability.
  • Characterization of the role of cellular cofactor Crm1 in the nuclear export process.

Conclusions:

  • Recent structural and biochemical studies have significantly enhanced our understanding of HIV-1 Rev-RRE interactions.
  • The detailed molecular mechanisms provide a foundation for designing targeted antiviral strategies.
  • Interference with Rev-mediated nuclear export represents a promising avenue for HIV-1 therapeutic development.