Loss of Cell Surface CD47 Clustering Formation and Binding Avidity to SIRPα Facilitate Apoptotic Cell Clearance by Macrophages
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Updated: Apr 9, 2026

Experimental Analysis of Apoptotic Thymocyte Engulfment by Macrophages
Published on: May 24, 2019
Zhiyuan Lv1, Zhen Bian1, Lei Shi1
1School of Life Sciences, Nanjing University, Nanjing 210023, China; Program of Cellular Biology and Immunology, Department of Biology, Georgia State University, Atlanta, GA 30303; and.
Abstract:
CD47, a self recognition marker expressed on tissue cells, interacts with immunoreceptor SIRPα expressed on the surface of macrophages to initiate inhibitory signaling that prevents macrophage phagocytosis of healthy host cells. Previous studies suggested that cells may lose surface CD47 during aging or apoptosis to enable phagocytic clearance. In the current study, we demonstrate that the level of cell surface CD47 is not decreased, but the distribution pattern of CD47 is altered, during apoptosis. On nonapoptotic cells, CD47 molecules are clustered in lipid rafts forming punctates on the surface, whereas on apoptotic cells, CD47 molecules are diffused on the cell surface following the disassembly of lipid rafts. We show that clustering of CD47 in lipid rafts provides a high binding avidity for cell surface CD47 to ligate macrophage SIRPα, which also presents as clusters, and elicits SIRPα-mediated inhibitory signaling that prevents phagocytosis. In contrast, dispersed CD47 on the apoptotic cell surface is associated with a significant reduction in the binding avidity to SIRPα and a failure to trigger SIRPα signal transduction. Disruption of plasma membrane lipid rafts with methyl-β-cyclodextrin diffuses CD47 clusters, leading to a decrease in the cell binding avidity to SIRPα and a concomitant increase in cells being engulfed by macrophages. Taken together, our study reveals that CD47 normally is clustered in lipid rafts on nonapoptotic cells but is diffused in the plasma membrane when apoptosis occurs; this transformation of CD47 greatly reduces the strength of CD47-SIRPα engagement, resulting in the phagocytosis of apoptotic cells.
Insights
Cell surface CD47 (Cluster of Differentiation 47) levels do not decrease during apoptosis. Instead, CD47 distribution shifts from clusters to diffusion, reducing macrophage phagocytosis inhibition.
Area of Science:
- Immunology
- Cell Biology
- Biochemistry
Background:
- CD47 acts as a 'don't eat me' signal, interacting with SIRPα on macrophages to prevent phagocytosis of healthy cells.
- Previous research suggested CD47 levels decrease during apoptosis, facilitating clearance.
- The precise mechanism regulating phagocytosis of apoptotic cells via CD47 remains incompletely understood.
Purpose of the Study:
- To investigate the role of CD47 distribution, not just its level, in the phagocytosis of apoptotic cells.
- To elucidate the relationship between CD47 localization in lipid rafts and its interaction with SIRPα.
- To determine how changes in CD47 distribution during apoptosis affect macrophage engulfment.
Main Methods:
- Analysis of CD47 distribution on nonapoptotic and apoptotic cells using microscopy.
- Investigation of CD47 clustering within lipid rafts.
- Assessment of CD47-SIRPα binding avidity and signaling using methyl-β-cyclodextrin to disrupt lipid rafts.
Main Results:
- Apoptosis alters CD47 distribution from clustered punctates in lipid rafts to a diffused pattern.
- Clustered CD47 enhances binding avidity to SIRPα, promoting inhibitory signaling and preventing phagocytosis.
- Diffused CD47 on apoptotic cells significantly reduces binding avidity to SIRPα, failing to inhibit phagocytosis.
Conclusions:
- The study reveals that CD47 distribution, specifically its clustering in lipid rafts, is critical for inhibiting phagocytosis of nonapoptotic cells.
- During apoptosis, CD47 diffusion disrupts this interaction, enabling macrophages to engulf the cells.
- Targeting CD47 distribution or lipid raft integrity could offer new strategies for apoptotic cell clearance.
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